Browse Element(s) Details


Os.10017.1.S1_at

Description gb:CB657305
DB_XREF= gi:29661030
DB_XREF=OSJNEc12I18.r
CLONE=OSJNEc12I18
TID=Os.10017.1
CNT=20
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) dnaJ-like protein (OJ1014_G12.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3756010/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37540NANA1+21291447..21297602transposon protein, putative, unclassified
LOC_Os01g37550NANA1+21298234..21301476transposon protein, putative, unclassified
LOC_Os01g37560Os.10017.1.S1_at10/111+21314607..21319239DnaJ domain containing protein, expressed
LOC_Os01g37570Os.24831.3.S1_x_at10/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.3.S1_s_at7/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.1.S1_x_at6/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.23706.1.A1_x_at1/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37580OsAffx.11362.2.S1_x_at11/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.11362.1.S1_at10/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.16381.1.S1_x_at1/111+21337410..21349541hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10017.1.S1_at--1147--6171Chr01:21316036..21316060 (25 bp)
GAGGAGCAGTATCCACACCAGAGCA
LOC_Os01g37560
Os.10017.1.S1_at--1105--8891Chr01:21316062..21316086 (25 bp)
TGAGCGTGCAACACTCGAACGGCAT
LOC_Os01g37560
Os.10017.1.S1_at--1134--1891Chr01:21316080..21316104 (25 bp)
ACGGCATGTTGAGCGGGATTACTTC
LOC_Os01g37560
Os.10017.1.S1_at--54--6171NONE
GAGGAGCTAGGCACACAAGAACTTT
NONE
Os.10017.1.S1_at--251--8751Chr01:21318900..21318924 (25 bp)
TGTAAAGGTTTCCAACGCTTGCTCC
LOC_Os01g37560
Os.10017.1.S1_at--364--4131Chr01:21318915..21318939 (25 bp)
CGCTTGCTCCTTTGATAGGCTTCAA
LOC_Os01g37560
Os.10017.1.S1_at--711--8211Chr01:21318982..21319006 (25 bp)
GGAATAAGTGCCTTCGATGACTACA
LOC_Os01g37560
Os.10017.1.S1_at--739--6311Chr01:21318997..21319021 (25 bp)
GATGACTACACACTCTGCCTTGATA
LOC_Os01g37560
Os.10017.1.S1_at--335--10671Chr01:21319024..21319048 (25 bp)
TTCCTGATAGTGTTGAGGCGCCTCA
LOC_Os01g37560
Os.10017.1.S1_at--898--891Chr01:21319039..21319063 (25 bp)
AGGCGCCTCAAACGGTAGCTACTTA
LOC_Os01g37560
Os.10017.1.S1_at--894--4951Chr01:21319132..21319156 (25 bp)
GCATATCTATGTCGTTTTTATCTCA
LOC_Os01g37560
Target Sequence 
GAGGAGCAGTATCCACACCAGAGCACTGAGCGTGCAACACTCGAACGGCATGTTGAGCGGGATTACTTCTCAATACTCTC
ACAGAATTGTAGGGTTGAGGTGCAGCGTCGCCACTGGGGGCTTTCCTACGAGACGCCGCACTGCGACATGCTCCGGAAAT
TTGAGGCAACAGCACAGTAATATGTCCAGAGGAGCTAGGCACACAAGAACTTTGGCCATGGTGTAAAGGTTTCCAACGCT
TGCTCCTTTGATAGGCTTCAAATTGGAGGGGACAAATTAGTTTTGACTCGTGGTAAATTTTGTGGAATAAGTGCCTTCGA
TGACTACACACTCTGCCTTGATACTTTCCTGATAGTGTTGAGGCGCCTCAAACGGTAGCTACTTAAATGGATATGTAATT
CATCAAGTTCCATAGGGGATTGATCAATATGCAATCATGTGTATGTATACGAAGCATATCTATGTCGTTTTTATCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis