Browse Element(s) Details


OsAffx.29478.1.S1_x_at

Description gb:XM_354431.1
DB_XREF= gi:35191345
TID=OsAffx.29478.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g327009/11hypothetical protein
LOC_Os02g105902/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein
LOC_Os08g32750Os.17697.1.A1_at11/118+20150203..20152643Eukaryotic-type carbonic anhydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29478.1.S1_x_at--113--10811Chr08:20123965..20123989 (25 bp)
TTGTACATTAACGTTTTCCATCTCA
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--228--2072Chr08:20123969..20123993 (25 bp)
ACATTAACGTTTTCCATCTCATCAC
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--145--6811Chr08:20123977..20124001 (25 bp)
GTTTTCCATCTCATCACAACTTTGA
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--166--3571Chr08:20123988..20124012 (25 bp)
CATCACAACTTTGAGTGCAGGTAAG
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--382--1372Chr08:20124016..20124040 (25 bp)
AGAGCTCTGATACCTCCTCAAGTAG
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--954--2831Chr08:20124035..20124059 (25 bp)
AAGTAGTCTACACTGATGAGAGCGT
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--717--3731Chr08:20124042..20124066 (25 bp)
CTACACTGATGAGAGCGTGCGGCCC
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--330--3551NONE
CATACCAGAGGAGGGCCTAACCATG
NONE
OsAffx.29478.1.S1_x_at--1086--1311NONE
AGAGGAGGGCCTAACCATGGAAATA
NONE
OsAffx.29478.1.S1_x_at--204--854Chr08:20125553..20125575 (23 bp)
ATGGAAATAGTTTCAGCTCATCAGA
LOC_Os08g32700
OsAffx.29478.1.S1_x_at--625--6834Chr08:20125560..20125584 (25 bp)
GTTTCAGCTCATCAGAAGTTTGCAT
LOC_Os08g32700
Target Sequence 
TTGTACATTAACGTTTTCCATCTCATCACAACTTTGAGTGCAGGTAAGAGGAGAGCTCTGATACCTCCTCAAGTAGTCTA
CACTGATGAGAGCGTGCGGCCCATACCAGAGGAGGGCCTAACCATGGAAATAGTTTCAGCTCATCAGAAGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29478.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis