Browse Element(s) Details


OsAffx.23497.1.A1_at

Description tigr:9629.m03177
TID=OsAffx.23497.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g326901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23497.1.A1_at--1142--211Chr01:18964900..18964924 (25 bp)
ATTTGTGGGAGCATGCCAGCGCCAA
NONE
OsAffx.23497.1.A1_at--196--10032Chr08:20120069..20120094 (23 bp)
TAGAGGGCGTGGCAAGGAGCAGCAG
LOC_Os08g32690
OsAffx.23497.1.A1_at--10--1531Chr01:18964833..18964857 (25 bp)
AGCAGCAGCGACAGATCGCGCACGT
NONE
OsAffx.23497.1.A1_at--10--9351Chr01:18964818..18964842 (25 bp)
TCGCGCACGTCCACGACCATGAGAG
NONE
OsAffx.23497.1.A1_at--64--691Chr01:18964800..18964824 (25 bp)
ATGAGAGTCCCCACCTCGACAGAGC
NONE
OsAffx.23497.1.A1_at--1009--1751Chr01:18964788..18964812 (25 bp)
ACCTCGACAGAGCCTTGGCGCACGT
NONE
OsAffx.23497.1.A1_at--869--4191Chr01:18964761..18964785 (25 bp)
CCCCGAGGTGTGATGCGAATACCGA
NONE
OsAffx.23497.1.A1_at--643--611Chr01:18964749..18964773 (25 bp)
ATGCGAATACCGATGAGGCGACCTT
NONE
OsAffx.23497.1.A1_at--577--5231Chr01:18964745..18964769 (25 bp)
GAATACCGATGAGGCGACCTTCACC
NONE
OsAffx.23497.1.A1_at--859--10512Chr02:1471936..1471956 (21 bp)
TTCACCACCGTCATTCCAGTCATGC
NONE
OsAffx.23497.1.A1_at--554--9611Chr01:18964652..18964676 (25 bp)
TCATCTGGAGCTTACTCCCAGCCGC
NONE
Target Sequence 
ATTTGTGGGAGCATGCCAGCGCCAAGCGGCGGCAGGCGCGGCGGGAGCGGTAGAGGGCGTGGCAAGGAGCAGCAGCGACA
GATCGCGCACGTCCACGACCATGAGAGTCCCCACCTCGACAGAGCCTTGGCGCACGTCCCCCCGAGGTGTGATGCGAATA
CCGATGAGGCGACCTTCACCACCGTCATTCCAGTCATGCCCGTCATCGCGCTCCGCTCGACCGAAGCTTCCTCCCCGCCG
CCTCGTCGTCATCTGGAGCTTACTCCCAGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23497.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis