Browse Element(s) Details


OsAffx.17302.2.S1_at

Description tigr:9636.m03274
TID=OsAffx.17302.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g327409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein
LOC_Os08g32750Os.17697.1.A1_at11/118+20150203..20152643Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g32760NANA8+20158666..20164824transposon protein, putative, unclassified
LOC_Os08g32770NANA8+20165457..20168638retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17302.2.S1_at--503--6351NONE
GATGCGGAGGCTAAGATTTTGTTAT
NONE
OsAffx.17302.2.S1_at--252--8011NONE
GGAGGCTAAGATTTTGTTATTGCAT
NONE
OsAffx.17302.2.S1_at--962--6791Chr08:20147842..20147866 (25 bp)
GTTATTGCATTTGATCCGTGATGTT
LOC_Os08g32740
OsAffx.17302.2.S1_at--471--4951Chr08:20147848..20147872 (25 bp)
GCATTTGATCCGTGATGTTAATTTT
LOC_Os08g32740
OsAffx.17302.2.S1_at--351--9292Chr08:20147856..20147880 (25 bp)
TCCGTGATGTTAATTTTGATGTTGT
LOC_Os08g32740
OsAffx.17302.2.S1_at--518--6291Chr08:20147873..20147897 (25 bp)
GATGTTGTTGCATTCAATCCGTGCC
LOC_Os08g32740
OsAffx.17302.2.S1_at--492--731Chr08:20147874..20147898 (25 bp)
ATGTTGTTGCATTCAATCCGTGCCG
LOC_Os08g32740
OsAffx.17302.2.S1_at--28--6651Chr08:20147876..20147900 (25 bp)
GTTGTTGCATTCAATCCGTGCCGTT
LOC_Os08g32740
OsAffx.17302.2.S1_at--351--6671Chr08:20147879..20147903 (25 bp)
GTTGCATTCAATCCGTGCCGTTGGA
LOC_Os08g32740
OsAffx.17302.2.S1_at--305--9071Chr08:20147881..20147905 (25 bp)
TGCATTCAATCCGTGCCGTTGGAAA
LOC_Os08g32740
OsAffx.17302.2.S1_at--799--3571Chr08:20147883..20147907 (25 bp)
CATTCAATCCGTGCCGTTGGAAAAA
LOC_Os08g32740
Target Sequence 
GATGCGGAGGCTAAGATTTTGTTATTGCATTTGATCCGTGATGTTAATTTTGATGTTGTTGCATTCAATCCGTGCCGTTG
GAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17302.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis