Browse Element(s) Details


Os.31488.1.S1_at

Description gb:AK107252.1
DB_XREF= gi:32992461
TID=Os.31488.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.9 (OSJNBa0077M12.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-G04, full insert sequence.
FL= gb:AK107252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3259011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31488.1.S1_at--483--571Chr08:20052774..20052798 (25 bp)
ATCCATGGACCACATCTGGGACACG
LOC_Os08g32590
Os.31488.1.S1_at--932--9451Chr08:20052788..20052812 (25 bp)
TCTGGGACACGGCTCGACTTGAAGA
LOC_Os08g32590
Os.31488.1.S1_at--477--991Chr08:20052814..20052838 (25 bp)
AGGATGCGTTTGTGCGGCGAAATTC
LOC_Os08g32590
Os.31488.1.S1_at--1015--1291Chr08:20052900..20052924 (25 bp)
AGATGAAGATCACCGGAGCCCGAAA
LOC_Os08g32590
Os.31488.1.S1_at--548--3311Chr08:20052976..20053000 (25 bp)
CACATCGCCAGGGATTGCAGAGGAT
LOC_Os08g32590
Os.31488.1.S1_at--479--7171Chr08:20053008..20053032 (25 bp)
GTCTCCTGAGCTTTGCATTACCTAA
LOC_Os08g32590
Os.31488.1.S1_at--420--1011Chr08:20053140..20053164 (25 bp)
AGGTTTCTCTTTGATGGCTTCTTTA
LOC_Os08g32590
Os.31488.1.S1_at--1062--2031Chr08:20053173..20053197 (25 bp)
ACTTATGGGCCATGGGAGCTATTTT
LOC_Os08g32590
Os.31488.1.S1_at--344--5911Chr08:20053188..20053212 (25 bp)
GAGCTATTTTATTCTCGACTCGTAG
LOC_Os08g32590
Os.31488.1.S1_at--351--4011Chr08:20053203..20053227 (25 bp)
CGACTCGTAGTTATGGGCCATGGCC
LOC_Os08g32590
Os.31488.1.S1_at--813--871Chr08:20053222..20053246 (25 bp)
ATGGCCTCATGCTTTTGGCAAAGAC
LOC_Os08g32590
Target Sequence 
ATCCATGGACCACATCTGGGACACGGCTCGACTTGAAGAGAGGATGCGTTTGTGCGGCGAAATTCGCCGTGGCGAGCACA
CTCAGGACAAGGAAGACGACGACGACCAAGGAGGAGGAGACTACCCAGATGAAGATCACCGGAGCCCGAAACGGAAGAGG
CGATACGATCGCGGGCCGTGCTACAACTGCGGCGAGCCGGGGCACATCGCCAGGGATTGCAGAGGATGAGCTGGGTCTCC
TGAGCTTTGCATTACCTAACTTCAGCTTATTTTGGATGTAGAAACCACAAGGGAATGCTCAAGGATGATAGGCATGTTGG
CAACTTAGTTGCTAGAGCAAATTAGGCTTATTTTGGTTGTCTAGTTAGGTTTCTCTTTGATGGCTTCTTTAGACATAGTA
CTTATGGGCCATGGGAGCTATTTTATTCTCGACTCGTAGTTATGGGCCATGGCCTCATGCTTTTGGCAAAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis