Browse Element(s) Details


Os.32734.1.S1_at

Description gb:AK103087.1
DB_XREF= gi:32988296
TID=Os.32734.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (OSJNBa0077M12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118I12, full insert sequence.
FL= gb:AK103087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3260011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006979biological_processresponse to oxidative stress
GO:0009908biological_processflower development
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32734.1.S1_at--290--9811Chr08:20054656..20054680 (25 bp)
TAAAGCGCCATCACCAAAGAGCCGA
LOC_Os08g32600
Os.32734.1.S1_at--758--2771Chr08:20054640..20054664 (25 bp)
AAGAGCCGAGGCATGACCAGGAAAC
LOC_Os08g32600
Os.32734.1.S1_at--307--2391Chr08:20054619..20054643 (25 bp)
AAACGGGATCGCGTCTACTGAATGG
LOC_Os08g32600
Os.32734.1.S1_at--639--8111Chr08:20054572..20054596 (25 bp)
GGACTAATGGTGACTTGACTACAAC
LOC_Os08g32600
Os.32734.1.S1_at--538--2991Chr08:20054542..20054566 (25 bp)
AATGTCAGCGATTGGTGGCCATACC
LOC_Os08g32600
Os.32734.1.S1_at--810--9311Chr08:20054501..20054525 (25 bp)
TCGCCACTCGTGTGACCTAACAAAA
LOC_Os08g32600
Os.32734.1.S1_at--538--2271Chr08:20054461..20054485 (25 bp)
AAATCCTTTTGGTGCTCATTTGAGT
LOC_Os08g32600
Os.32734.1.S1_at--376--1551Chr08:20054334..20054358 (25 bp)
AGCTTTATGTTAACGATGCCTTGGC
LOC_Os08g32600
Os.32734.1.S1_at--438--6351Chr08:20054320..20054344 (25 bp)
GATGCCTTGGCGATTTTGGGAGCCC
LOC_Os08g32600
Os.32734.1.S1_at--357--1671Chr08:20054300..20054324 (25 bp)
AGCCCTCCAAGTGTGGCAGGATGGC
LOC_Os08g32600
Os.32734.1.S1_at--161--5931Chr08:20054198..20054222 (25 bp)
GAGCTTGCCGTTTGCGAGCATGTAA
LOC_Os08g32600
Target Sequence 
TAAAGCGCCATCACCAAAGAGCCGAGGCATGACCAGGAAACGGGATCGCGTCTACTGAATGGNAACGAGAATTGTCATCN
GGCAGGACTAATGGTGACTTGACTACAACTGTACAATGTCAGCGATTGGTGGCCATACCAGTACAGTGCACTGCCTCGCC
ACTCGTGTGACCTAACAAAAATTTTCATAGCTGCCAAATCCTTTTGGTGCTCATTTGAGTNTGATATGAAGGCTANTTCC
AGGTGGGCATTTGGATTTGAAGNCAGGCTGTCACGATTTGCCCNCAGGGGAACAGTTTNNTGGCTGTTNCGCCTACAATA
TGCAGCTTTATGTTAACGATGCCTTGGCGATTTTGGGAGCCCTCCAAGTGTGGCAGGATGGCTTATGCGCAGAAGGAATN
GTTGTACTTTTATTTTTTTTCCCTTTCTNTTCGTTGTTTTTGTAAGAAAGATACTCCAAGAGCTTGCCGTTTGCGAGCAT
GTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis