Browse Element(s) Details


Os.33601.2.S1_x_at

Description gb:NM_188923.1
DB_XREF= gi:34904929
GEN=OSJNBa0077M12.7
TID=Os.33601.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.7 (OSJNBa0077M12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077M12.7 (OSJNBa0077M12.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3257011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein
LOC_Os08g32570Os.54408.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.2.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.54408.1.S1_x_at11/118+20038458..20041681expressed protein
LOC_Os08g32570Os.33601.1.S1_at11/118+20038458..20041681expressed protein
LOC_Os08g32580Os.2741.4.S1_x_at8/118+20043808..20049748retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33601.2.S1_x_at--877--2671Chr08:20038627..20038651 (25 bp)
AAGCGAGGCCATCAGATTTGCCAGC
LOC_Os08g32570
Os.33601.2.S1_x_at--302--891Chr08:20038632..20038656 (25 bp)
AGGCCATCAGATTTGCCAGCGACGA
LOC_Os08g32570
Os.33601.2.S1_x_at--69--3571Chr08:20038636..20038660 (25 bp)
CATCAGATTTGCCAGCGACGAGCCC
LOC_Os08g32570
Os.33601.2.S1_x_at--769--1851Chr08:20038653..20038677 (25 bp)
ACGAGCCCAGGCTACCGGATCCGGT
LOC_Os08g32570
Os.33601.2.S1_x_at--916--7491Chr08:20038718..20038742 (25 bp)
GTGGTGGGCATAGGCGACGGCGCGT
LOC_Os08g32570
Os.33601.2.S1_x_at--468--4171Chr08:20038946..20038970 (25 bp)
CGCCTCCTCGGCGTGTATGGAGAAA
LOC_Os08g32570
Os.33601.2.S1_x_at--3--4671Chr08:20038956..20038980 (25 bp)
GCGTGTATGGAGAAACGGAACCGTC
LOC_Os08g32570
Os.33601.2.S1_x_at--507--2171Chr08:20039203..20039227 (25 bp)
ACACGTCGGTGCCTGGGAGAATCAA
LOC_Os08g32570
Os.33601.2.S1_x_at--195--371Chr08:20039223..20039247 (25 bp)
ATCAAGGAGGATTCGGCAGCGACCG
LOC_Os08g32570
Os.33601.2.S1_x_at--340--6471Chr08:20039387..20039411 (25 bp)
GATAAGACGGCCATCGCTGCAGCGA
LOC_Os08g32570
Os.33601.2.S1_x_at--123--3851Chr08:20039403..20039427 (25 bp)
CTGCAGCGAAGAGCTCGCGCAGGAA
LOC_Os08g32570
Target Sequence 
AAGCGAGGCCATCAGATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGA
CAGCGGTGGAGGTGGTGGGCATAGGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGC
GGGCGACGGCCAACCCCCGCACGGATCCGATGGCCGGTCGCCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCC
CTGGCGCTGCAGTCGCCCCTCCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCC
GCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAA
TCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGGGGATAAG
ACGGCCATCGCTGCAGCGAAGAGCTCGCGCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33601.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis