Browse Element(s) Details


Os.10320.1.S1_x_at

Description gb:AK066193.1
DB_XREF= gi:32976211
TID=Os.10320.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0462H08.25 (P0462H08.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052J22, full insert sequence.
FL= gb:AK066193.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1549011/11phosphoadenosine phosphosulfate, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15480Os.501.1.S1_at11/111+8688631..8696430protein kinase, putative, expressed
LOC_Os01g15490Os.10320.1.S1_x_at11/111+8697966..8705373phosphoadenosine phosphosulfate, putative, expressed
LOC_Os01g15500OsAffx.23260.1.S1_at11/111+8710942..8711923hypothetical protein
LOC_Os01g15510OsAffx.10015.1.S1_s_at11/111+8712257..8713650hypothetical protein
LOC_Os01g15520Os.46094.1.S1_at6/111+8714655..8717700hypothetical protein
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10320.1.S1_x_at--715--10831Chr01:8699698..8699722 (25 bp)
TTGTGTCAAAGCATCTCTGCACGTC
LOC_Os01g15490
Os.10320.1.S1_x_at--884--3771Chr01:8699686..8699708 (23 bp)
CTCTGCACGTCGCTATTAGATGTTA
LOC_Os01g15490
Os.10320.1.S1_x_at--220--1291Chr01:8699126..8699146 (21 bp)
AGATGTTAAAATTGCCCCAGTGGTT
LOC_Os01g15490
Os.10320.1.S1_x_at--149--7971Chr01:8698969..8698993 (25 bp)
GGATCTCAAGATCTGGGCCTTTGGT
LOC_Os01g15490
Os.10320.1.S1_x_at--459--7611Chr01:8698437..8698461 (25 bp)
GGGCAATTCTCCCAAGTTGACAGTT
LOC_Os01g15490
Os.10320.1.S1_x_at--418--6091Chr01:8698397..8698421 (25 bp)
GAGTACACACTTCGATAGTCTTCCC
LOC_Os01g15490
Os.10320.1.S1_x_at--465--31Chr01:8698346..8698370 (25 bp)
ATTGTGCAGGGCTAATGACGCGATA
LOC_Os01g15490
Os.10320.1.S1_x_at--1148--1911Chr01:8698322..8698346 (25 bp)
ACGGTGCTCGGATGGCTTGATCCAA
LOC_Os01g15490
Os.10320.1.S1_x_at--642--871Chr01:8698298..8698322 (25 bp)
ATGGCCGGAATCTGGACTCTGGAGC
LOC_Os01g15490
Os.10320.1.S1_x_at--220--8131Chr01:8698285..8698309 (25 bp)
GGACTCTGGAGCTCCACATATTATT
LOC_Os01g15490
Os.10320.1.S1_x_at--344--9551Chr01:8698144..8698168 (25 bp)
TTTGACCGGGCTAAGGGCTCGTAAT
LOC_Os01g15490
Target Sequence 
TTGTGTCAAAGCATCTCTGCACGTCGCTATTAGATGTTAAAATTGCCCCAGTGGTTGCAAAACTATGCATAGATTTTTCT
GATGTATACATAGGTTGTTATCGGATCTCAAGATCTGGGCCTTTGGTTGTGAGTTTTATTGGGAAGGACAATCAGAGGGT
AGAAGCAGCTGCCGAGAAGCTGACGAATAGCTTTGAAGGGCAATTCTCCCAAGTTGACAGTTGCAAATAAGCTTTCTGAG
TACACACTTCGATAGTCTTCCCGTGCTCTTCCTGCTGGAAGTTCTGAAATTGTGCAGGGCTAATGACGCGATACGGTGCT
CGGATGGCTTGATCCAATGGCCGGAATCTGGACTCTGGAGCTCCACATATTATTTAGGAAAGGAAACATAGAAATTTTGT
CCTAGAAATTTAGAAGTGAATTACTGAATCAACAGCAGAGGTGCTCTAGCATGAAGCTGATATAGAATGGCGGCTTTCCA
CGCCCGATATTTTGACCGGGCTAAGGGCTCGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10320.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis