Browse Element(s) Details


Os.12672.1.S1_a_at

Description gb:AK067283.1
DB_XREF= gi:32977301
TID=Os.12672.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12672 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein kinase (P0462H08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100E20, full insert sequence.
FL= gb:AK067283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1547011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15480Os.501.1.S1_at11/111+8688631..8696430protein kinase, putative, expressed
LOC_Os01g15490Os.10320.1.S1_x_at11/111+8697966..8705373phosphoadenosine phosphosulfate, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12672.1.S1_a_at--599--1331Chr01:8683799..8683823 (25 bp)
AGAGTTACCCCGAACGGCGCTGATA
LOC_Os01g15470
Os.12672.1.S1_a_at--258--4411Chr01:8683962..8683986 (25 bp)
GCCACAGATTGCATACGTTTTGAAG
LOC_Os01g15470
Os.12672.1.S1_a_at--713--1891Chr01:8683990..8684014 (25 bp)
CCGCGGACCGAATAATAACTGTTAG
LOC_Os01g15470
Os.12672.1.S1_a_at--454--8531Chr01:8684054..8684078 (25 bp)
TGGACCTACACCAGAGTGAGCGCTT
LOC_Os01g15470
Os.12672.1.S1_a_at--895--8911Chr01:8684070..8684094 (25 bp)
TGAGCGCTTGGGAGATTTCACCGGT
LOC_Os01g15470
Os.12672.1.S1_a_at--293--10331Chr01:8684085..8684109 (25 bp)
TTTCACCGGTGAAGTCTACTAAATT
LOC_Os01g15470
Os.12672.1.S1_a_at--896--10471Chr01:8684109..8684133 (25 bp)
TTACATCCAGACTTGTTTCACTACA
LOC_Os01g15470
Os.12672.1.S1_a_at--689--8571Chr01:8684138..8684162 (25 bp)
TGGATTCTTATTTCTCATCATATAG
LOC_Os01g15470
Os.12672.1.S1_a_at--235--10391Chr01:8684263..8684287 (25 bp)
TTTTCTGTAGTTGGATGTCTCTTGT
LOC_Os01g15470
Os.12672.1.S1_a_at--396--6271Chr01:8684276..8684300 (25 bp)
GATGTCTCTTGTGAATCCATGTACA
LOC_Os01g15470
Os.12672.1.S1_a_at--646--3511Chr01:8684299..8684323 (25 bp)
CATGAGCTGGTACCATAAGTGCTAC
LOC_Os01g15470
Target Sequence 
AGAGTTACCCCGAACGGCGCTGATAGAGAGCGTGCGCTTGCAGAGGCAAATGTATGGGTCGAGGCTTGGAGACGTCAAGA
GAAGACGAGCAAAATGCGGTAATCAACGAAAAGCTTCTCGCTGCTAGCTTCATTTGATCATAGGAACAGAATTGACAAGG
TATGCCACAGATTGCATACGTTTTGAAGAAACCGCGGACCGAATAATAACTGTTAGAAGACGATAGCGAATAATAATGAT
CAGTGAGTTNTTCTGTGGACCTACACCAGAGTGAGCGCTTGGGAGATTTCACCGGTGAAGTCTACTAAATTTACATCCAG
ACTTGTTTCACTACATACATGGATTCTTATTTCTCATCATATAGATAATTTAGCTTCTATAGGTTAAAGTCGCAGGAGGG
GATATGTACATGTAAATAACCCCCTCATAACAGAAGTGGCAGATGCAGAGCATACATATATTTCTTTTCTGTAGTTGGAT
GTCTCTTGTGAATCCATGTACATGAGCTGGTACCATAAGTGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12672.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis