Browse Element(s) Details


Os.9931.1.S1_a_at

Description gb:AK111633.1
DB_XREF= gi:37988296
TID=Os.9931.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0462H08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116H24, full insert sequence.
FL= gb:AK111633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1546011/11Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9931.1.S1_a_at--1101--7491Chr01:8656879..8656903 (25 bp)
GTGGTCGCTGATTTTTCTGAGCTGA
LOC_Os01g15460
Os.9931.1.S1_a_at--17--8971Chr01:8656732..8656850 (25 bp)
TGACACAGTTATGATAGGCCCCTCC
LOC_Os01g15460
Os.9931.1.S1_a_at--909--6491Chr01:8656720..8656744 (25 bp)
GATAGGCCCCTCCAATGTGAATAAA
LOC_Os01g15460
Os.9931.1.S1_a_at--515--7431Chr01:8656658..8656682 (25 bp)
GTGTTTCTCTGCCATCTCAATAAAG
LOC_Os01g15460
Os.9931.1.S1_a_at--396--7891Chr01:8656625..8656649 (25 bp)
GGTTACAGGCAAGCTCGATTCACTT
LOC_Os01g15460
Os.9931.1.S1_a_at--1121--5191Chr01:8656600..8656624 (25 bp)
GCAATTTTTGCGTTCTTCTGTTCTC
LOC_Os01g15460
Os.9931.1.S1_a_at--568--5271Chr01:8656547..8656571 (25 bp)
GAATGTCAGGCTCGATAGTTCTCAT
LOC_Os01g15460
Os.9931.1.S1_a_at--625--6491Chr01:8656534..8656558 (25 bp)
GATAGTTCTCATCGGCAGTTCGCGG
LOC_Os01g15460
Os.9931.1.S1_a_at--513--8251Chr01:8656511..8656535 (25 bp)
GGCACTGGGAGACTCGGATCCATTC
LOC_Os01g15460
Os.9931.1.S1_a_at--1117--7971Chr01:8656496..8656520 (25 bp)
GGATCCATTCCCTCGGTAAATAATT
LOC_Os01g15460
Os.9931.1.S1_a_at--227--5391Chr01:8656445..8656469 (25 bp)
GAAGCTACTGGATTTTGCTCGTCCA
LOC_Os01g15460
Target Sequence 
GTGGTCGCTGATTTTTCTGAGCTGAGAGATCTCAGCACAATTTTTCAATCACTTGACACAGTTATGATAGGCCCCTCCAA
TGTGAATAAAAAGCTGTGGCCTCTGTAGAGAAGGCTCGGCGAGGGTGGTGTTTCTCTGCCATCTCAATAAAGCATTCATA
GGTTACAGGCAAGCTCGATTCACTTGCAATTTTTGCGTTCTTCTGTTCTCTGAAACGGGAAAGAAAAGGAAGGTTTTTGA
ATGTCAGGCTCGATAGTTCTCATCGGCAGTTCGCGGCACTGGGAGACTCGGATCCATTCCCTCGGTAAATAATTCTCAGG
CAAGGAGGTTTATACATGCAGAAGCTACTGGATTTTGCTCGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9931.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis