Browse Element(s) Details


Os.9931.3.S1_x_at

Description gb:NM_187934.1
DB_XREF= gi:34902951
GEN=P0462H08.19
TID=Os.9931.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9931 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative zinc finger protein (P0462H08.19), mRNA.
PROD=putative zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1546011/11Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15470Os.12672.1.S1_a_at11/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g15470Os.12672.3.S1_at10/111+8679813..8684383Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9931.3.S1_x_at--825--51Chr01:8658735..8658759 (25 bp)
ATTGCTTATGGTGGTCCTTACGTTC
LOC_Os01g15460
Os.9931.3.S1_x_at--823--10471Chr01:8658718..8658742 (25 bp)
TTACGTTCCATATGCTTCCTCAACT
LOC_Os01g15460
Os.9931.3.S1_x_at--674--1431Chr01:8658670..8658694 (25 bp)
AGAACATGGATTCCCTGAGCGGCCA
LOC_Os01g15460
Os.9931.3.S1_x_at--396--3471Chr01:8658647..8658671 (25 bp)
CAGGGCAGCCTGATTGTCAATATTA
LOC_Os01g15460
Os.9931.3.S1_x_at--95--4211Chr01:8658573..8658597 (25 bp)
CCCCGAGAGTTGAGTGCACCTAAAT
LOC_Os01g15460
Os.9931.3.S1_x_at--188--911Chr01:8658547..8658571 (25 bp)
AGGCTATATGGTCAACTCCCTTTGT
LOC_Os01g15460
Os.9931.3.S1_x_at--305--7591Chr01:8657236..8657260 (25 bp)
GGGCTCAGCCTTGTGCATACTATGC
LOC_Os01g15460
Os.9931.3.S1_x_at--444--4331Chr01:8657105..8657129 (25 bp)
CCATATCCTATTGGCTTCTCTATTG
LOC_Os01g15460
Os.9931.3.S1_x_at--76--3411Chr01:8656987..8657011 (25 bp)
CAGCATCCGAGCCTGTTGGATCAAT
LOC_Os01g15460
Os.9931.3.S1_x_at--1064--7671Chr01:8656951..8656975 (25 bp)
GGGTTTTCCCAGCAGACACCATGAT
LOC_Os01g15460
Os.9931.3.S1_x_at--96--2171Chr01:8656936..8656960 (25 bp)
ACACCATGATGCGTGCTCAGACTAA
LOC_Os01g15460
Target Sequence 
ATTGCTTATGGTGGTCCTTACGTTCCATATGCTTCCTCAACTGGACAATCAAGCAACAATCAACAAGAACATGGATTCCC
TGAGCGGCCAGGGCAGCCTGATTGTCAATATTATATGAGAACAGGAGATTGCAAATTTGGAGCTACATGTAAATATCATC
ACCCCCGAGAGTTGAGTGCACCTAAATCAGGCTATATGGTCAACTCCCTTTGTCTTCCACTTCGTCCGGGGGCTCAGCCT
TGTGCATACTATGCCCAAAATGGGTATTGCAGATATGGAGTTGCATGCAAGTATGATCACCCAATGGGCACGCTTGGCTA
CAGTCCGTCTGCTTTGCCCCTCTCTGATATGCCAATTGCCCCATATCCTATTGGCTTCTCTATTGCCACATTGGCTCCGT
CTTCGCCTTCCCCGGATTTAAGGCCAGAATACATTTCGACCAAAGACCAATCTGTCAACCAAGTAACATCGCCAGTGGCA
GCATCCGAGCCTGTTGGATCAATATTGCCGAAAGGGGTTTTCCCAGCAGACACCATGATGCGTGCTCAGACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9931.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis