Browse Element(s) Details


OsAffx.10018.1.S1_at

Description gb:NM_187931.1
DB_XREF= gi:34902945
GEN=P0462H08.16
TID=OsAffx.10018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0462H08.16 (P0462H08.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g154003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15370NANA1+8609474..8612269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15380Os.43764.1.A1_at5/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.2.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.7.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.3.S1_x_at1/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15390Os.21017.2.S1_at11/111+8624680..8625938expressed protein
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10018.1.S1_at--1089--551Chr01:8630391..8630415 (25 bp)
ATCCGGCGTGCGCTGTACACGGCAA
LOC_Os01g15400
OsAffx.10018.1.S1_at--688--2172Chr02:17883944..17883968 (25 bp)
ACACGGCAAGCGGTGTTTCTAGCGC
NONE
OsAffx.10018.1.S1_at--936--9992Chr02:17883963..17883987 (25 bp)
TAGCGCCGCTCCGTGTGGAACAGAA
NONE
OsAffx.10018.1.S1_at--979--4631Chr01:8633498..8633522 (25 bp)
GCGTCACCGGCGTTGAACATGTCGA
NONE
OsAffx.10018.1.S1_at--863--5471Chr01:8633512..8633536 (25 bp)
GAACATGTCGATGAGCCCGACGGGC
NONE
OsAffx.10018.1.S1_at--90--611Chr01:8633572..8633596 (25 bp)
ATGCGGAAGCGGCACATCTTCCCGG
NONE
OsAffx.10018.1.S1_at--911--5931Chr01:8633674..8633698 (25 bp)
GAGCAGTTCATGAACCGGCTGCGCC
NONE
OsAffx.10018.1.S1_at--1157--9151Chr01:8633693..8633717 (25 bp)
TGCGCCCGTTAATGAGCAGCGACTG
NONE
OsAffx.10018.1.S1_at--643--2611Chr01:8633727..8633751 (25 bp)
AACCCAGACCATGGGCACGGAGGCG
NONE
OsAffx.10018.1.S1_at--713--9711Chr01:8633821..8633845 (25 bp)
TCAACGGCGATCATGCCTTTGAGAC
NONE
OsAffx.10018.1.S1_at--637--4231Chr01:8633849..8633873 (25 bp)
CCGAGCGCTACATCCGTAGTGGGCG
NONE
Target Sequence 
ATCCGGCGTGCGCTGTACACGGCAAGCGGTGTTTCTAGCGCCGCTCCGTGTGGAACAGAAGCACGGAAACACGGAAACAG
AACGATTAAAATTTGCGTGGACTACAAAGGCGGCGCCAAAACGGCCGCAACCGCGCACCCTGGGCGGCACGACAGCTGCG
GTGGCGTCGATGGCGCACTCCTCGATGGCGTCACCGGCGTTGAACATGTCGATGAGCCCGACGGGCGCGAACGGACCACG
AAGAGGGAGGTGACGCTGGCGATGCGGAAGCGGCACATCTTCCCGGGCACCACGGCGAACACCGCCGGCGCGCAGTCCGG
GTGCGCCATGTTGCGCGACGCCGCCACCGTCGCTGGCAAGGACGAGCAGTTCATGAACCGGCTGCGCCCGTTAATGAGCA
GCGACTGCGGCTCGCCAACCCAGACCATGGGCACGGAGGCGAGCCCCGCCGCCTGCTCATACGTGCTCCGGTGCCACCAG
TCGTTGAGCAGCACGGTGTGCTGGGCAGCCTCAACGGCGATCATGCCTTTGAGACCCGCCGAGCGCTACATCCGTAGTGG
GCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis