Browse Element(s) Details


Os.21017.2.S1_at

Description gb:AK108960.1
DB_XREF= gi:32994169
TID=Os.21017.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21017 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0462H08.14 (P0462H08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-D02, full insert sequence.
FL= gb:AK108960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1539011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15360Os.51348.1.S1_x_at2/111+8600953..8603870retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15370NANA1+8609474..8612269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15380Os.43764.1.A1_at5/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.2.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.7.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.3.S1_x_at1/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15390Os.21017.2.S1_at11/111+8624680..8625938expressed protein
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21017.2.S1_at--964--9731Chr01:8625209..8625233 (25 bp)
TCAATCCTCTATAGCAAGTCCTCGA
LOC_Os01g15390
Os.21017.2.S1_at--1091--1991Chr01:8625369..8625393 (25 bp)
ACTCCCTGCCATGGAATTGTGGCCA
LOC_Os01g15390
Os.21017.2.S1_at--850--5411Chr01:8625437..8625461 (25 bp)
GAAGCCCGGGATACACGACCTGAGG
LOC_Os01g15390
Os.21017.2.S1_at--384--5831Chr01:8625453..8625477 (25 bp)
GACCTGAGGTCAGCGTGCACTTCTG
LOC_Os01g15390
Os.21017.2.S1_at--951--7331Chr01:8625467..8625491 (25 bp)
GTGCACTTCTGCCTCTGTAGCCGAG
LOC_Os01g15390
Os.21017.2.S1_at--311--10071Chr01:8625525..8625549 (25 bp)
TAGTGTAGATGGCTCGACCTCTTGC
LOC_Os01g15390
Os.21017.2.S1_at--395--9231Chr01:8625561..8625742 (25 bp)
TCCAGTGCCCGATGCCAGTTGCAGG
LOC_Os01g15390
Os.21017.2.S1_at--317--10811Chr01:8625796..8625820 (25 bp)
TTGGTATTGGTTTCGAACTCCTTGG
LOC_Os01g15390
Os.21017.2.S1_at--1095--6511Chr01:8625839..8625863 (25 bp)
GATATTCCACGTTGTTATTTTGCTT
LOC_Os01g15390
Os.21017.2.S1_at--904--6891Chr01:8625873..8625897 (25 bp)
GTATCCAGCTGGACATGTTTTGGCC
LOC_Os01g15390
Os.21017.2.S1_at--452--2111Chr01:8625885..8625909 (25 bp)
ACATGTTTTGGCCAGCTATGGAAGA
LOC_Os01g15390
Target Sequence 
TCAATCCTCTATAGCAAGTCCTCGATCCGCGCCTCCTCGGATCCTCCGCGGCAAGCCGGCAATCCCCACACCCCTGCCAC
TTTTGTCGCCGTCGTCAACATCCTCTCTGCCCGAGCCCGAAGCCTCAGATCTACGCTCATGCCGCCGCCGTCATTGTGTG
ACTCCCTGCCATGGAATTGTGGCCACGCCACCTCGGCGCTGTTGTCCATACCCTCTCCGCCTGAGCCCGAAGCCCGGGAT
ACACGACCTGAGGTCAGCGTGCACTTCTGCCTCTGTAGCCGAGCCTGGCGTGGTGCTGACTCTGGGAGAAGACATCTAGT
GTAGATGGCTCGACCTCTTGCTGCGGCCTCTGTCCAGTGCCCGATGCCAGTTGCAGGCTGGAATGTGGATCGACCACATC
GTGATGATTGGGAGCATTCCCAAGGACAGATTGGTATTGGTTTCGAACTCCTTGGGGTTCAAATCATGTTGGTGATATTC
CACGTTGTTATTTTGCTTTGTAATATAGTATCCAGCTGGACATGTTTTGGCCAGCTATGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21017.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis