Browse Element(s) Details


OsAffx.31638.1.S1_at

Description tigr:9640.m00721
TID=OsAffx.31638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0790011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07880Os.19541.1.S1_at11/1112+3985781..3993483dynamin family protein, putative, expressed
LOC_Os12g07890OsAffx.19545.1.S1_at11/1112+3999138..4000451expressed protein
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein
LOC_Os12g07910OsAffx.26950.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910OsAffx.23260.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910Os.55223.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31638.1.S1_at--860--3731Chr12:4005572..4005596 (25 bp)
CTCACCTACCTATAACAGAAGTTAC
LOC_Os12g07900
OsAffx.31638.1.S1_at--669--2851Chr12:4005544..4005568 (25 bp)
AAGTCGTCAAGTGAATGCTTCAAGT
LOC_Os12g07900
OsAffx.31638.1.S1_at--659--631Chr12:4005530..4005554 (25 bp)
ATGCTTCAAGTTCATTCGAAATTGG
LOC_Os12g07900
OsAffx.31638.1.S1_at--884--9351Chr12:4005515..4005539 (25 bp)
TCGAAATTGGTTAACTCATGGGATA
LOC_Os12g07900
OsAffx.31638.1.S1_at--813--1432Chr04:23916596..23916912 (25 bp)
AGAACTTCAATACCTCAGATCCAAG
NONE
OsAffx.31638.1.S1_at--1150--6351Chr12:4005383..4005407 (25 bp)
GATCCAAGAAGGTTTACAACTGAAG
LOC_Os12g07900
OsAffx.31638.1.S1_at--1153--10051Chr12:4005337..4005361 (25 bp)
TAGTCTTCAAAGATTTTCTAGCTGA
LOC_Os12g07900
OsAffx.31638.1.S1_at--250--10571Chr12:4005322..4005346 (25 bp)
TTCTAGCTGATATTGTCTGGACGTT
LOC_Os12g07900
OsAffx.31638.1.S1_at--661--11Chr12:4005311..4005335 (25 bp)
ATTGTCTGGACGTTGCTACAAAACA
LOC_Os12g07900
OsAffx.31638.1.S1_at--1147--2391Chr12:4005273..4005297 (25 bp)
AAACAGATGGTGCTTACCTGGTCCT
LOC_Os12g07900
OsAffx.31638.1.S1_at--969--9651Chr12:4005259..4005283 (25 bp)
TACCTGGTCCTTATAATTTTTGTGA
LOC_Os12g07900
Target Sequence 
CTCACCTACCTATAACAGAAGTTACAAGAAGTCGTCAAGTGAATGCTTCAAGTTCATTCGAAATTGGTTAACTCATGGGA
TAGAGAACTTCAATACCTCAGATCCAAGAAGGTTTACAACTGAAGATATGGACTATCTATTGGAGATAGTCTTCAAAGAT
TTTCTAGCTGATATTGTCTGGACGTTGCTACAAAACAACATTGGGAATTTAAACAGATGGTGCTTACCTGGTCCTTATAA
TTTTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis