Browse Element(s) Details


Os.52430.1.S1_at

Description gb:AK067069.1
DB_XREF= gi:32977087
TID=Os.52430.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093I24, full insert sequence.
FL= gb:AK067069.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0795011/11transcriptional regulator, Sir2 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein
LOC_Os12g07910OsAffx.26950.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910OsAffx.23260.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910Os.55223.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005677cellular_componentchromatin silencing complex
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52430.1.S1_at--415--8191Chr12:4031642..4031666 (25 bp)
GGAAGTCTAGCTGTACCAAACGTAA
LOC_Os12g07950
Os.52430.1.S1_at--408--2591Chr12:4031624..4031648 (25 bp)
AACGTAAGTTAAGCTGGTGCTGCGC
LOC_Os12g07950
Os.52430.1.S1_at--808--10771Chr12:4031591..4031615 (25 bp)
TTGTCGGAAACCATGTTTCCATGTA
LOC_Os12g07950
Os.52430.1.S1_at--1061--10491Chr12:4031495..4031519 (25 bp)
TTAAGTTCAGTTCAACTGGGCAGAA
LOC_Os12g07950
Os.52430.1.S1_at--365--9711Chr12:4031484..4031508 (25 bp)
TCAACTGGGCAGAATATCATCTCCA
LOC_Os12g07950
Os.52430.1.S1_at--703--7351Chr12:4031352..4031376 (25 bp)
GTGACAATTCATTCAAATGTTTCCA
LOC_Os12g07950
Os.52430.1.S1_at--998--8751Chr12:4031335..4031359 (25 bp)
TGTTTCCAAAGATATGGATATCCCG
LOC_Os12g07950
Os.52430.1.S1_at--434--7951Chr12:4031320..4031344 (25 bp)
GGATATCCCGAACTGATCAGCACAT
LOC_Os12g07950
Os.52430.1.S1_at--123--1431Chr12:4031237..4031261 (25 bp)
AAAACGTTCTAGCTGGTCCGGATAT
LOC_Os12g07950
Os.52430.1.S1_at--277--1611Chr12:4031227..4031251 (25 bp)
AGCTGGTCCGGATATTTGGATTCAT
LOC_Os12g07950
Os.52430.1.S1_at--868--3511Chr12:4031205..4031229 (25 bp)
CATGTAGTCTATTGTGCTCTTCACC
LOC_Os12g07950
Target Sequence 
GGAAGTCTAGCTGTACCAAACGTAAGTTAAGCTGGTGCTGCGCAGTCATCTTTGTCGGAAACCATGTTTCCATGTAAGAA
CAATTCTTTGGAGAACAAACAAGTCACAAGGGAAGACGAAACAATGAAAGAAACTTTTAGCAACTAATTAAGTTCAGTTC
AACTGGGCAGAATATCATCTCCATCCTGTTTGCATGAGATGAGGGAGTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGT
AAACCTTAACCTTGTTAACCCTGTTGTTGTAAGTGTGTAAACCTTTTTCAGTGACAATTCATTCAAATGTTTCCAAAGAT
ATGGATATCCCGAACTGATCAGCACATTGAAGAAGTACAATATGCTTTGATAGTTCCTTGTAATGTGTCATTAAGCAGAA
GTTGAAAAACGTTCTAGCTGGTCCGGATATTTGGATTCATGTAGTCTATTGTGCTCTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis