Browse Element(s) Details


Os.9259.1.S1_at

Description gb:AK062318.1
DB_XREF= gi:32972336
TID=Os.9259.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033134F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C06, full insert sequence.
FL= gb:AK062318.1 gb:AK103639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g079805/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os12g08010OsAffx.7519.1.S1_at11/1112+4069505..4069912hypothetical protein
LOC_Os12g08020OsAffx.7520.1.S1_at11/1112+4073907..4074511hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9259.1.S1_at--875--711Chr12:4050851..4050875 (25 bp)
ATGATCATCCCGGTGCGGTGCTTCA
LOC_Os12g07980
Os.9259.1.S1_at--55--3271Chr12:4053096..4053115 (20 bp)
CAACACGCTGGAGAAGACCGAGACA
LOC_Os12g07980
Os.9259.1.S1_at--919--6691Chr12:4053152..4053176 (25 bp)
GTTCCTTATTGCCTTTGTTCACGAA
LOC_Os12g07980
Os.9259.1.S1_at--694--10411Chr12:4053157..4053181 (25 bp)
TTATTGCCTTTGTTCACGAATGTTC
LOC_Os12g07980
Os.9259.1.S1_at--780--751Chr12:4053220..4053244 (25 bp)
ATGTAACTGTTACCGTGATGTCAGA
LOC_Os12g07980
Os.9259.1.S1_at--1154--9451Chr12:4053279..4053303 (25 bp)
TCTGGTTGTGTGTGAACTTGTTTTC
NONE
Os.9259.1.S1_at--254--6811Chr12:4053298..4053322 (25 bp)
GTTTTCAAGACTTTTATATCAAGGG
NONE
Os.9259.1.S1_at--1149--4271Chr12:4053332..4053356 (25 bp)
CCTGCAGTAATTTTCTTATTGTGAT
NONE
Os.9259.1.S1_at--470--3131Chr12:4053340..4053364 (25 bp)
AATTTTCTTATTGTGATTTGCTAAT
NONE
Os.9259.1.S1_at--1083--10251Chr12:4053356..4053380 (25 bp)
TTTGCTAATTTGCTGTATGGATAAT
NONE
Os.9259.1.S1_at--173--7951Chr12:4053374..4053398 (25 bp)
GGATAATGGGCTGTGTTTTTGAAAA
NONE
Target Sequence 
ATGATCATCCCGGTGCGGTGCTTCACCTGCGGGAAGGTGATTGGGAACAAGTGGGATCTGTACCTGGATCTCCTCCAGGC
TGACTACACAGAGGGGGATGCTCTGGATGCATTGGGTTTGGTCCGTTACTGCTGCCGGCGAATGCTCATGACCCATGTTG
ACCTCATCGAGAAGTTACTCAACTACAACACGCTGGAGAAGACCGAGACAGCAGGTTAAGTTGACCCAGCATGCTCCAGA
ACTCTTGTTCCTTATTGCCTTTGTTCACGAATGTTCCAAGGAATTTGTGTGATGATCCATGCTGCATTTCAACTATGTAA
CTGTTACCGTGATGTCAGANGATGGAAGTGATATNNNNNAACTAGTGGGCAGAGTACCTCTGGTTGTGTGTGAACTTGTT
TTCAAGACTTTTATATCAAGGGGGGNTATGTTCCTGCAGTAATTTTCTTATTGTGATTTGCTAATTTGCTGTATGGATAA
TGGGCTGTGTTTTTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis