Browse Element(s) Details


Os.7655.1.S1_a_at

Description gb:AK120612.1
DB_XREF= gi:37990235
TID=Os.7655.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151J15, full insert sequence.
FL= gb:AK073945.1 gb:AK120612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0794011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein
LOC_Os12g07910OsAffx.26950.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910OsAffx.23260.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910Os.55223.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7655.1.S1_a_at--960--7571Chr12:4028456..4028480 (25 bp)
GGGCTGTCGTTCAACATTGATTTCA
LOC_Os12g07940
Os.7655.1.S1_a_at--548--5391Chr12:4029210..4029234 (25 bp)
GAAGCAGGAGCATCCACCGATGTTA
LOC_Os12g07940
Os.7655.1.S1_a_at--591--9411Chr12:4029246..4029270 (25 bp)
TCGTCCGTCCATTATCAACACAAGA
LOC_Os12g07940
Os.7655.1.S1_a_at--310--3271Chr12:4029261..4029285 (25 bp)
CAACACAAGATTGGCCTCGGTTTAT
LOC_Os12g07940
Os.7655.1.S1_a_at--1026--1011Chr12:4029392..4029416 (25 bp)
AGGTTTACTGCTGATTGTGCCTTCT
LOC_Os12g07940
Os.7655.1.S1_a_at--252--7291Chr12:4029408..4029432 (25 bp)
GTGCCTTCTGCTTCGATAATCATCA
LOC_Os12g07940
Os.7655.1.S1_a_at--179--2511Chr12:4029441..4029465 (25 bp)
AACATGTTCCTAGTTGCTTCGTTCT
LOC_Os12g07940
Os.7655.1.S1_a_at--815--4891Chr12:4029456..4029480 (25 bp)
GCTTCGTTCTCCAGACAACGTTTTA
LOC_Os12g07940
Os.7655.1.S1_a_at--607--3171Chr12:4029488..4029512 (25 bp)
AATTGGGATGTTGTGGCCGCCGATA
LOC_Os12g07940
Os.7655.1.S1_a_at--860--8411Chr12:4029502..4029526 (25 bp)
GGCCGCCGATATTGGAACTAGCATT
LOC_Os12g07940
Os.7655.1.S1_a_at--803--10751Chr12:4029536..4029560 (25 bp)
TTGAGCCCTGTTTGTTTCTTTTTCT
LOC_Os12g07940
Target Sequence 
GGGCTGTCGTTCAACATTGATTTCATATGCAGCATGCTCTCGAAGTAATTACAATCAGGTCGTGATGGTAGGAAATATGT
TGAATGAAGCAGGAGCATCCACCGATGTTACGCCTGACCGATCGTCCGTCCATTATCAACACAAGATTGGCCTCGGTTTA
TGATGTTGTGGACTTTGGCGGGGTGTTTTTGGTATAGACATAAGGTTTTGCATATCTTTGTGTTAAAATGGAGGGTCGTT
AGTTTCTTGTTTGTTTGGAGATGTCTTAGGTTTACTGCTGATTGTGCCTTCTGCTTCGATAATCATCACAAAGCTAAACA
TGTTCCTAGTTGCTTCGTTCTCCAGACAACGTTTTAGAAGAAAAATTGGGATGTTGTGGCCGCCGATATTGGAACTAGCA
TTGCCTGTGTTTTGAGCCCTGTTTGTTTCTTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7655.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis