Browse Element(s) Details


Os.47939.1.S1_at

Description gb:AK071259.1
DB_XREF= gi:32981282
TID=Os.47939.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084F19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084F19, full insert sequence.
FL= gb:AK058227.1 gb:AK071259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0797011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os12g08010OsAffx.7519.1.S1_at11/1112+4069505..4069912hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008514molecular_functionorganic anion transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47939.1.S1_at--93--4811Chr12:4045802..4045826 (25 bp)
GCTCGGTTTTCTGGCCCTAGGAAGA
LOC_Os12g07970
Os.47939.1.S1_at--2--5371Chr12:4045822..4045846 (25 bp)
GAAGAGCAGGCTTCGCCGTGAATCA
LOC_Os12g07970
Os.47939.1.S1_at--628--7351Chr12:4045839..4045863 (25 bp)
GTGAATCACATGGACGTTGCTCCAA
LOC_Os12g07970
Os.47939.1.S1_at--254--7671Chr12:4045885..4045909 (25 bp)
GGGTTTCAAATACAGCTGGGACATT
LOC_Os12g07970
Os.47939.1.S1_at--385--10551Chr12:4046007..4046031 (25 bp)
TTCTTTGTTCCAGGGTACCTCTGTA
LOC_Os12g07970
Os.47939.1.S1_at--828--7671Chr12:4046019..4046043 (25 bp)
GGGTACCTCTGTATTTTCAGTTCCA
LOC_Os12g07970
Os.47939.1.S1_at--240--10371Chr12:4046048..4046072 (25 bp)
TTTTTTGATTTTCTCCACTGGCGAA
LOC_Os12g07970
Os.47939.1.S1_at--282--6171Chr12:4046087..4046111 (25 bp)
GAGGATGACTATTCTTTTACTTTTA
LOC_Os12g07970
Os.47939.1.S1_at--222--8351Chr12:4046123..4046147 (25 bp)
GGCTGGATAGCAATACGGGATTCTT
LOC_Os12g07970
Os.47939.1.S1_at--685--4731Chr12:4046338..4046362 (25 bp)
GCTGTCACCTATTCAGGCTTATTGC
LOC_Os12g07970
Os.47939.1.S1_at--1084--8291Chr12:4046353..4046377 (25 bp)
GGCTTATTGCACCTTTTTGTATTGA
LOC_Os12g07970
Target Sequence 
GCTCGGTTTTCTGGCCCTAGGAAGAGCAGGCTTCGCCGTGAATCACATGGACGTTGCTCCAAAATTTGCTGGTATAGTGA
TGGGGGTTTCAAATACAGCTGGGACATTGGCTGGGATAGTTGGTGTTGGCCTAACGGGAAGTATTCTGGAGGGGGCAAAG
GCTTCTAACATGGATCTGACAAACTCAGAAACCTGGAAAACAGTCTTCTTTGTTCCAGGGTACCTCTGTATTTTCAGTTC
CATCATTTTTTTGATTTTCTCCACTGGCGAAAAGATTTTTGAATAGAGGATGACTATTCTTTTACTTTTAATTTACGGTG
AGGCTGGATAGCAATACGGGATTCTTACATGTATCTGTTTGTCATTTGTTATATTTTGGAGTTAAGATTGTATCCCATAC
ATCCTTAAAAAACAGTGCAGAAAGGATTGCACATTTTTTGTAGTAAATTTATCATTTCTGTAGTCAGTCAAGTTTCTGTT
ATTCANGCAGATTGGNTGGCATCTTTACAACTTACAAGTGTAACATTATGTATTCTGCTGTCACCTATTCAGGCTTATTG
CACCTTTTTGTATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis