Browse Element(s) Details


Os.7655.1.S2_at

Description gb:AK073945.1
DB_XREF= gi:32983968
TID=Os.7655.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073N02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073N02, full insert sequence.
FL= gb:AK073945.1 gb:AK120612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0794011/11expressed protein
LOC_Os04g442101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein
LOC_Os12g07910OsAffx.26950.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910OsAffx.23260.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910Os.55223.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7655.1.S2_at--1078--7951Chr12:4029958..4029982 (25 bp)
GGATCAGTGCTTATTTCGAGTGTGT
LOC_Os12g07940
Os.7655.1.S2_at--448--832Chr12:4029999..4030023 (25 bp)
ATGGATCAGTGCTTACTTCCCCATC
LOC_Os12g07940
Os.7655.1.S2_at--443--1654Chr12:4030030..4030054 (25 bp)
AGCGAAAACACATGCCTGACAGAGT
LOC_Os12g07940
Os.7655.1.S2_at--668--7895Chr12:4030058..4030082 (25 bp)
GGTTGCAGGCCAGAACATGTTTTCG
LOC_Os12g07940
Os.7655.1.S2_at--1127--9855Chr12:4030090..4030114 (25 bp)
TACAGGACAAACTTCGACAGCGCTT
LOC_Os12g07940
Os.7655.1.S2_at--248--4574Chr12:4030109..4030133 (25 bp)
GCGCTTGTATGCTGATTTGCTGGCA
LOC_Os12g07940
Os.7655.1.S2_at--1108--2275Chr12:4030169..4030193 (25 bp)
AAAGATCGAGAAGCCCTAACCAGTT
LOC_Os12g07940
Os.7655.1.S2_at--4--9553Chr12:4030267..4030291 (25 bp)
TCTTTCTGTTGTGTTGACGTTTCCA
LOC_Os12g07940
Os.7655.1.S2_at--1101--10674Chr12:4030287..4030311 (25 bp)
TTCCAGTTCTTTAGTTTGCCGGGCT
LOC_Os12g07940
Os.7655.1.S2_at--583--8576Chr12:4030313..4030337 (25 bp)
TGGTTCCTGCCACAGTCTAATTCGA
LOC_Os12g07940
Os.7655.1.S2_at--957--1674Chr12:4030339..4030363 (25 bp)
AGCCTCCTGTCGTTGCAAGCGAGAA
LOC_Os12g07940
Target Sequence 
GGATCAGTGCTTATTTCGAGTGTGTGGAGACTGATGCGGCAATGGATCAGTGCTTACTTCCCCATCCCTGGGAGCGAAAA
CACATGCCTGACAGAGTGGTGGTTGCAGGCCAGAACATGTTTTCGGAAGTGCTACAGGACAAACTTCGACAGCGCTTGTA
TGCTGATTTGCTGGCAGATTTGGAAGGAAAGAAATGCGCGTGTTTTCGACCAAAGATCGAGAAGCCCTAACCAGTTAGCA
GAGGCTATCAAAGAAGAGATCTTAGTGTGGAAAGAAGCAGGCTATTTCGAGAATTGCAGTTCTTAGTTTTCTTTCTGTTG
TGTTGACGTTTCCAGTTCTTTAGTTTGCCGGGCTGTGGTTCCTGCCACAGTCTAATTCGACAGCCTCCTGTCGTTGCAAG
CGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7655.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis