Browse Element(s) Details


OsAffx.23523.4.S1_x_at

Description tigr:9640.m00731
TID=OsAffx.23523.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0799010/11Protein kinase domain containing protein
LOC_Os12g080506/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07940Os.7655.1.S2_at11/1112+4027027..4030556expressed protein
LOC_Os12g07940Os.7655.1.S1_a_at11/1112+4027027..4030556expressed protein
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os12g08010OsAffx.7519.1.S1_at11/1112+4069505..4069912hypothetical protein
LOC_Os12g08020OsAffx.7520.1.S1_at11/1112+4073907..4074511hypothetical protein
LOC_Os12g08030Os.57133.1.S1_at1/1112+4081210..4083892expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23523.4.S1_x_at--134--1611Chr12:4055763..4055787 (25 bp)
AGCTGCTTCTTCTCATCTTCTTGAA
LOC_Os12g07990
OsAffx.23523.4.S1_x_at--864--5372Chr12:4091346..4091416 (25 bp)
GAAGAATTCAAGTACTTGGCTCCAG
LOC_Os12g08050
OsAffx.23523.4.S1_x_at--763--10852Chr12:4091331..4091355 (25 bp)
TTGGCTCCAGAGTACTTCATGCACG
LOC_Os12g08050
OsAffx.23523.4.S1_x_at--694--7012Chr12:4091320..4091344 (25 bp)
GTACTTCATGCACGGCAAGGTCAGC
LOC_Os12g08050
OsAffx.23523.4.S1_x_at--1064--4592Chr12:4055646..4055670 (25 bp)
GCGACAAGATCGACGTGTACGCCTT
LOC_Os12g07990
OsAffx.23523.4.S1_x_at--281--1691Chr12:4055551..4055575 (25 bp)
AGCCTCGTCATGTGGGCGAACACCA
LOC_Os12g07990
OsAffx.23523.4.S1_x_at--31--7492Chr12:4091190..4091214 (25 bp)
GTGGGCGAACACCATCATACAAGGA
LOC_Os12g08050
OsAffx.23523.4.S1_x_at--552--952Chr12:4091166..4091190 (25 bp)
AGGAAAGCTCACTGACCTCGTCGAC
LOC_Os12g08050
OsAffx.23523.4.S1_x_at--248--2611Chr12:4055403..4055427 (25 bp)
AACGCCGGCCTAGCATTGCAAATGT
LOC_Os12g07990
OsAffx.23523.4.S1_x_at--819--731NONE
ATGTTCTGAAACTGCTCGACGGCGA
NONE
OsAffx.23523.4.S1_x_at--939--8131Chr12:4055181..4055205 (25 bp)
GGACATCCAGTCGTACATCAACCTT
LOC_Os12g07990
Target Sequence 
AGCTGCTTCTTCTCATCTTCTTGAAGAATTCAAGTACTTGGCTCCAGAGTACTTCATGCACGGCAAGGTCAGCGACAAGA
TCGACGTGTACGCCTTCGGCGTCGTCCTCCTCGAGCTCGTCTCCGGGAGGAAGCCGGTGAGCTCCGGCGGCGGCAAGGGC
AAGGAGAGCCTCGTCATGTGGGCGAACACCATCATACAAGGAGGAAAGCTCACTGACCTCGTCGACCCCAGCCTGCCGAC
GGACGGCAGCGGCGTCGCCGGCGAGGTCGAGAGGATGACCCTCGCCGCCGCCCTCTGCATCCGGCGATCGCCGCAACGCC
GGCCTAGCATTGCAAATGTTCTGAAACTGCTCGACGGCGATGGCGACGCTGTCAGGTGGGTGAGGTCGCAGGCCGGTCTG
TCCGCCGGCGACGACACCGACGACGGCGATGGCGCTTCGCCGGAGAAGAAGGACATCCAGTCGTACATCAACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23523.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis