Browse Element(s) Details


Os.57133.1.S1_at

Description gb:AK110994.1
DB_XREF= gi:32996203
TID=Os.57133.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-E02, full insert sequence.
FL= gb:AK110994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g080301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os12g08010OsAffx.7519.1.S1_at11/1112+4069505..4069912hypothetical protein
LOC_Os12g08020OsAffx.7520.1.S1_at11/1112+4073907..4074511hypothetical protein
LOC_Os12g08030Os.57133.1.S1_at1/1112+4081210..4083892expressed protein
LOC_Os12g08040NANA12+4088698..4089162retrotransposon protein, putative, unclassified
LOC_Os12g08050OsAffx.23523.4.S1_x_at6/1112+4090708..4092044Protein kinase domain containing protein
LOC_Os12g08050OsAffx.23523.4.S1_at6/1112+4090708..4092044Protein kinase domain containing protein
LOC_Os12g08060OsAffx.23523.3.S1_at11/1112+4092623..4096609universal stress protein family protein
LOC_Os12g08060Os.45422.1.S1_x_at2/1112+4092623..4096609universal stress protein family protein
LOC_Os12g08070Os.53153.1.S1_at2/1112+4102232..4104818TRAF-type zinc finger family protein
LOC_Os12g08070Os.51244.1.S1_at1/1112+4102232..4104818TRAF-type zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57133.1.S1_at--1063--6511Chr12:4083390..4083414 (25 bp)
GATATTCTTTAGTTCTTCTGAGCAG
LOC_Os12g08030
Os.57133.1.S1_at--1123--5371Chr12:4083889..4083913 (25 bp)
GAAGCAATGGTAATCGCGGTCGCAA
NONE
Os.57133.1.S1_at--701--6031Chr12:4083925..4083949 (25 bp)
GAGATGTTCACCTTGTGTGTTTCCT
NONE
Os.57133.1.S1_at--361--6411Chr12:4084028..4084052 (25 bp)
GATCTGTAATCCTTGATGCGCGGGT
NONE
Os.57133.1.S1_at--585--591Chr12:4084043..4084067 (25 bp)
ATGCGCGGGTCAGGCTTACCAAGTA
NONE
Os.57133.1.S1_at--980--8271Chr12:4084055..4084079 (25 bp)
GGCTTACCAAGTACCAACGCTATTT
NONE
Os.57133.1.S1_at--1015--6771Chr12:4084098..4084122 (25 bp)
GTTACCCTGTACCTGTGATTGCTAT
NONE
Os.57133.1.S1_at--652--7411Chr12:4084112..4084136 (25 bp)
GTGATTGCTATTTTGTTGTCCGTCA
NONE
Os.57133.1.S1_at--1009--7031Chr12:4084146..4084170 (25 bp)
GTAATGGAGTCCAAGGCAGCCCTTC
NONE
Os.57133.1.S1_at--164--751Chr12:4084206..4084230 (25 bp)
ATGTTTGCCTGACGTTCCATTGCAA
NONE
Os.57133.1.S1_at--797--5171Chr12:4084227..4084251 (25 bp)
GCAAGTCCAGGCCAGGAATCCTATT
NONE
Target Sequence 
GATATTCTTTAGTTCTTCTGAGCAGAGGAAAGGGATAGATGATGCATAGGACAAATGGGAAGCAATGGTAATCGCGGTCG
CAAGCACTAAAGCTGAGATGTTCACCTTGTGTGTTTCCTGGTATAATGAAAGAATATGTATCAGGGGGACAATAGGGTTA
GGTTTCAGTTATTATGGTCTACATTCCTGAAAACCTTGATCTGTAATCCTTGATGCGCGGGTCAGGCTTACCAAGTACCA
ACGCTATTTATTAGGAGTCGTGGGATGGTTACCCTGTACCTGTGATTGCTATTTTGTTGTCCGTCAATTTGTCAAGTAAT
GGAGTCCAAGGCAGCCCTTCGAAAATTAGGAGGGAAACGCTGCAGCAGGGGATTTATGTTTGCCTGACGTTCCATTGCAA
GTCCAGGCCAGGAATCCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis