Browse Element(s) Details


Os.53153.1.S1_at

Description gb:AK071049.1
DB_XREF= gi:32981072
TID=Os.53153.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023077B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077B16, full insert sequence.
FL= gb:AK071049.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1419011/11TRAF-type zinc finger family protein, expressed
LOC_Os04g141107/11TRAF-type zinc finger family protein
LOC_Os05g239507/11TRAF-type zinc finger family protein
LOC_Os12g080702/11TRAF-type zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14170NANA4+7914797..7915611retrotransposon protein, putative, unclassified, expressed
LOC_Os04g14180OsAffx.13812.1.S1_at11/114+7924114..7925565hypothetical protein
LOC_Os04g14190Os.53153.1.S1_at11/114+7927410..7929579TRAF-type zinc finger family protein, expressed
LOC_Os04g14200NANA4+7939194..7940132hypothetical protein
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004659molecular_functionprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53153.1.S1_at--230--1993Chr05:13706570..13706594 (25 bp)
ACTGCGTGACTGTGTGCCCCATGAG
LOC_Os05g23950
Os.53153.1.S1_at--125--8893Chr05:13706591..13706615 (25 bp)
TGAGGCCCATGAAATGCCCTTTTGG
LOC_Os05g23950
Os.53153.1.S1_at--245--2293Chr05:13706602..13706626 (25 bp)
AAATGCCCTTTTGGCTGTGATTCCT
LOC_Os05g23950
Os.53153.1.S1_at--767--8813Chr05:13706619..13706643 (25 bp)
TGATTCCTCCTTTCCTGAGCGTAAT
LOC_Os05g23950
Os.53153.1.S1_at--898--3054Chr05:13706641..13706665 (25 bp)
AATCTTGAGCAGCACTGTTCTGAGT
LOC_Os05g23950
Os.53153.1.S1_at--121--974Chr05:13706735..13706759 (25 bp)
AGGACCATGCTCTACTGCTGGAAAA
LOC_Os05g23950
Os.53153.1.S1_at--642--7833Chr05:13706943..13706967 (25 bp)
GGTAAACTGGCTAAATCTCGGGATG
LOC_Os05g23950
Os.53153.1.S1_at--387--7513Chr05:13707031..13707055 (25 bp)
GTGGATGGCGTCTCCAGAGCAAAAT
NONE
Os.53153.1.S1_at--155--5373Chr05:13707109..13707133 (25 bp)
GAAGAGTTGTTTCCACTCACAGTAT
NONE
Os.53153.1.S1_at--683--6573Chr05:13707150..13707174 (25 bp)
GATTCTGCACGTTTTTCCTTTACAA
NONE
Os.53153.1.S1_at--1151--9833Chr05:13707170..13707194 (25 bp)
TACAACTATAATTTTCCCCTCATGA
NONE
Target Sequence 
ACTGCGTGACTGTGTGCCCCATGAGGCCCATGAAATGCCCTTTTGGCTGTGATTCCTCCTTTCCTGAGCGTAATCTTGAG
CAGCACTGTTCTGAGTTTCTTCAGGCACACCTCCATAAACTCCTCAAGGCTATTCATAAGAAAGGTTTTACAGATGAGGG
GCTCAAGGACCATGCTCTACTGCTGGAAAAGCATGACAATGATGGTAAACTGGCTAAATCTCGGGATGTAAGATCTCTTA
CTAATGTTGTAAAGAATCTTGAAGCCAAAATAAAAGATGATTCGAGTTAGAGTGGATGGCGTCTCCAGAGCAAAATGCAA
GTTTTTTTTGAGGCAGCAAAATGCAGCATGGATATTGAATGGTATAGTTGAAGAGTTGTTTCCACTCACAGTATACACAG
AAGAGTACAAGATTCTGCACGTTTTTCCTTTACAACTATAATTTTCCCCTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis