Browse Element(s) Details


OsAffx.13812.1.S1_at

Description tigr:9632.m01295
TID=OsAffx.13812.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1418011/11hypothetical protein
LOC_Os04g141401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14170NANA4+7914797..7915611retrotransposon protein, putative, unclassified, expressed
LOC_Os04g14180OsAffx.13812.1.S1_at11/114+7924114..7925565hypothetical protein
LOC_Os04g14190Os.53153.1.S1_at11/114+7927410..7929579TRAF-type zinc finger family protein, expressed
LOC_Os04g14200NANA4+7939194..7940132hypothetical protein
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13812.1.S1_at--1025--6573Chr04:7940184..7940208 (25 bp)
GATTCTGTGAAAAATCCGGCGCACG
NONE
OsAffx.13812.1.S1_at--615--5611Chr04:7925179..7925203 (25 bp)
GACAACTGTTCATCGTTTTCCCTAG
LOC_Os04g14180
OsAffx.13812.1.S1_at--467--9391Chr04:7925191..7925215 (25 bp)
TCGTTTTCCCTAGTTGAAGGCCAGA
LOC_Os04g14180
OsAffx.13812.1.S1_at--1148--7771Chr04:7925241..7925265 (25 bp)
GGTGCTCCGGGTTAACGACATCATG
LOC_Os04g14180
OsAffx.13812.1.S1_at--616--2091Chr04:7925258..7925282 (25 bp)
ACATCATGAGTTGTTGTCCGGCAAA
LOC_Os04g14180
OsAffx.13812.1.S1_at--1070--7811Chr04:7925306..7925330 (25 bp)
GGTCTTGGTCAATGAGCTTGGTGCA
LOC_Os04g14180
OsAffx.13812.1.S1_at--50--8591Chr04:7925343..7925367 (25 bp)
TGGTTTTGTTGGATCTAGCCTCTTC
LOC_Os04g14180
OsAffx.13812.1.S1_at--534--4311Chr04:7925370..7925394 (25 bp)
CCTTTCTACTGCTTGGATTTGGTCT
LOC_Os04g14180
OsAffx.13812.1.S1_at--783--10851Chr04:7925388..7925412 (25 bp)
TTGGTCTTATTTGGTTCACCCTGTA
LOC_Os04g14180
OsAffx.13812.1.S1_at--1128--8351Chr04:7925474..7925498 (25 bp)
TGTCTCCGCCTATGGGAACAACCAT
LOC_Os04g14180
OsAffx.13812.1.S1_at--847--2631Chr04:7925493..7925517 (25 bp)
AACCATCAGTGAGGATGCTGCCGCC
LOC_Os04g14180
Target Sequence 
GATTCTGTGAAAAATCCGGCGCACGAGTGCACGACGGTGNGGGGGCGAGAGAGCGCGAGGAGGAAATGCGTGGGAGATGC
GGGAGAAAGAGGAGGGAAGAGCGAGACACAGGACGGTGGATGCGGCGTGATTTCNCCATTTCAGGTGCGGGNAGGAGAGG
AGGGGGAGAGGTGGGNNNANNNNNNGNGNNNNNTNNNNNNNGACAACTGTTCATCGTTTTCCCTAGTTGAAGGCCAGAAA
CAAAAGAGGGGGAAGATGGGCGCGGTGCTCCGGGTTAACGACATCATGAGTTGTTGTCCGGCAAAATCCACCACCATCCA
TTCAATGAGGTCTTGGTCAATGAGCTTGGTGCAGCTAGATGAGGTTGGTTTTGTTGGATCTAGCCTCTTCCTCCTTTCTA
CTGCTTGGATTTGGTCTTATTTGGTTCACCCTGTAGCTCCCGATCTCTCGCGCACAGCCACCGCAGACTACGCTTACACG
CCACCGTTTGCCTCTCTGTCTCCGCCTATGGGAACAACCATCAGTGAGGATGCTGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis