Browse Element(s) Details


Os.52537.1.S1_at

Description gb:AK067819.1
DB_XREF= gi:32977837
TID=Os.52537.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118K22, full insert sequence.
FL= gb:AK067819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1422011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14190Os.53153.1.S1_at11/114+7927410..7929579TRAF-type zinc finger family protein, expressed
LOC_Os04g14200NANA4+7939194..7940132hypothetical protein
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52537.1.S1_at--287--3131Chr04:7954202..7954226 (25 bp)
AATTTCATCCTCCTCTAACATGTTG
LOC_Os04g14220
Os.52537.1.S1_at--211--6511Chr04:7954077..7954101 (25 bp)
GATATATCGGCTTAAGGCGCACCAA
LOC_Os04g14220
Os.52537.1.S1_at--436--8391Chr04:7954062..7954086 (25 bp)
GGCGCACCAAAGTCAAGTCATTTCC
LOC_Os04g14220
Os.52537.1.S1_at--279--7111Chr04:7953952..7953976 (25 bp)
GTCAGGAAGCTACGACACCTTTTAG
LOC_Os04g14220
Os.52537.1.S1_at--733--6511Chr04:7953898..7953922 (25 bp)
GATTTCCGGTACTTCACTGGAGTTC
LOC_Os04g14220
Os.52537.1.S1_at--554--5031Chr04:7953733..7953757 (25 bp)
GCAGTTCTTTTTTCTACACTATCAA
LOC_Os04g14220
Os.52537.1.S1_at--775--2251Chr04:7953710..7953734 (25 bp)
AAATATGCCACTTCTTTCAACCCTG
LOC_Os04g14220
Os.52537.1.S1_at--272--4191Chr04:7953690..7953714 (25 bp)
CCCTGCTTCTTTCCGCAAGTAGTAA
LOC_Os04g14220
Os.52537.1.S1_at--1131--5971Chr04:7953660..7953685 (25 bp)
GAGACGCTTTGTTTCAAACCCTCGA
LOC_Os04g14220
Os.52537.1.S1_at--861--2371Chr04:7953645..7953669 (25 bp)
AAACCCTCGAGCCTATTTCAGGGAG
LOC_Os04g14220
Os.52537.1.S1_at--869--9631Chr04:7953628..7953652 (25 bp)
TCAGGGAGGCTCCACAAGCTAATTG
LOC_Os04g14220
Target Sequence 
AATTTCATCCTCCTCTAACATGTTGTCCTCAATTTTCTCTGAATCCACCTACCTCACTGTCCTTGAGCTGCAAGATTCTG
AAATCACTGAAGTGCCAACAAGTATAGGGAATCTGTTTAACCTAAGATATATCGGCTTAAGGCGCACCAAAGTCAAGTCA
TTTCCAGAGACAATTGAGAAACTCTATAATCTCCACACTCTAGACATCAAGCAGACAAAAATAGAGAAGCTACCACGAGG
GATTGTCAAGGTCAGGAAGCTACGACACCTTTTAGCTGACAAATGTGCTGATGAGAAGCATTCAGATTTCCGGTACTTCA
CTGGAGTTCAACCTCCGAAAGAGCTATCCAACTTAGAAGAGTTGCAGACACTCGAAACTGTGGAAGCCAGCAAAGATTTG
GCCGAGCAGCTGAAGAAACTTACGCAACTGTGAAGCGTGTGGATTGACAACATAACTGATGTTGATTGTGCAGTTCTTTT
TTCTACACTATCAAATATGCCACTTCTTTCAACCCTGCTTCTTTCCGCAAGTAGTAAAACTGAGACGCTTTGTTTCAAAC
CCTCGAGCCTATTTCAGGGAGGCTCCACAAGCTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis