Browse Element(s) Details


OsAffx.10309.1.S1_x_at

Description gb:NM_185872.1
DB_XREF= gi:34898829
GEN=OJ1058_A12.12
TID=OsAffx.10309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1058_A12.12 (OJ1058_A12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g135901/11hypothetical protein
LOC_Os06g160201/11hypothetical protein
LOC_Os04g142501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g13560OsAffx.16467.1.S1_at6/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.2.S1_s_at2/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.32199.1.A1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560OsAffx.23039.1.S1_x_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13560Os.26886.6.S1_s_at1/114+7557119..7560582hypothetical protein
LOC_Os04g13570OsAffx.13805.1.S1_at11/114+7561773..7562096hypothetical protein
LOC_Os04g13580OsAffx.13806.1.S1_at11/114+7567627..7568067hypothetical protein
LOC_Os04g13590OsAffx.3783.1.S1_at11/114+7573234..7574958hypothetical protein
LOC_Os04g13590OsAffx.10309.1.S1_x_at1/114+7573234..7574958hypothetical protein
LOC_Os04g13600OsAffx.25936.1.S1_s_at9/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.7.S1_s_at7/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.2.S1_x_at5/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13600OsAffx.25936.5.S1_x_at2/114+7576026..7579064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13610NANA4+7581201..7581815hypothetical protein
LOC_Os04g13620Os.10827.1.S1_x_at7/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13620Os.46055.2.S1_x_at5/114+7582424..7585714transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.47463.1.S1_x_at5/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g13630Os.14491.2.S1_x_at4/114+7586016..7599129transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10309.1.S1_x_at--773--9351Chr07:21075819..21075843 (25 bp)
TCGAGAATCGGCGTGTGCCAGGATT
NONE
OsAffx.10309.1.S1_x_at--1112--7451Chr07:21075831..21075855 (25 bp)
GTGTGCCAGGATTGGAGTCACCGCC
NONE
OsAffx.10309.1.S1_x_at--424--9671Chr07:21075848..21076317 (25 bp)
TCACCGCCACCACTAAGAAAACTAT
NONE
OsAffx.10309.1.S1_x_at--40--5532Chr07:21076309..21076333 (25 bp)
GAAAACTATAACCACTACACTGGCC
NONE
OsAffx.10309.1.S1_x_at--720--20153Chr12:24868079..24868103 (25 bp)
ACTACACTGGCCAAGGTCACCTGTG
NONE
OsAffx.10309.1.S1_x_at--935--32182Chr12:24868090..24868114 (25 bp)
CAAGGTCACCTGTGACGGGCCCAAA
NONE
OsAffx.10309.1.S1_x_at--215--4544Chr12:24508177..24508201 (25 bp)
ATCTTTGACGGCTTCGCGCATGGTC
NONE
OsAffx.10309.1.S1_x_at--848--8271Chr07:21076372..21076396 (25 bp)
GGCTTCGCGCATGGTCAATGATCAG
NONE
OsAffx.10309.1.S1_x_at--233--4134Chr08:20203313..20203333 (21 bp)
CGCATGGTCAATGATCAGTGGTCAC
NONE
OsAffx.10309.1.S1_x_at--16--34759Chr12:24508208..24508232 (25 bp)
CAGTGGTCACTGGTGAGTCCAGTCA
NONE
OsAffx.10309.1.S1_x_at--1128--72759Chr12:24868163..24868187 (25 bp)
GTGAGTCCAGTCACCTTTGACGGGT
NONE
Target Sequence 
TCGAGAATCGGCGTGTGCCAGGATTGGAGTCACCGCCACCACTAAGAAAACTATAACCACTACACTGGCCAAGGTCACCT
GTGACGGGCCCAAACCCTCATCTTTGACGGCTTCGCGCATGGTCAATGATCAGTGGTCACTGGTGAGTCCAGTCACCTTT
GACGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10309.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis