Browse Element(s) Details


OsAffx.32199.1.A1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32199.1
CNT=1
FEA=DNA_70
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF137 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g167806/11Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g135601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32199.1.A1_x_at--597--52515Chr12:16630640..16630664 (25 bp)
GAATCTACTTCAACCGATATGCCCT
NONE
OsAffx.32199.1.A1_x_at--386--64914Chr12:16630655..16630679 (25 bp)
GATATGCCCTTAGGCACGGCCATAC
NONE
OsAffx.32199.1.A1_x_at--548--9315Chr12:16630666..16630690 (25 bp)
AGGCACGGCCATACATAACATAGAA
NONE
OsAffx.32199.1.A1_x_at--16--31313Chr12:16630713..16630737 (25 bp)
AATTAGCTAGAGCAGCAGGTGCTGT
NONE
OsAffx.32199.1.A1_x_at--173--77913Chr12:16630730..16630754 (25 bp)
GGTGCTGTAGCGAAACTGATTGCAA
NONE
OsAffx.32199.1.A1_x_at--877--94512Chr12:16630766..16630790 (25 bp)
TCGGCCACTTTAAGATTACCATCTG
NONE
OsAffx.32199.1.A1_x_at--66--85912Chr10:10474949..10474972 (24 bp)
TGGTATCCCAAAACTGCTTAGCAAC
NONE
OsAffx.32199.1.A1_x_at--561--2559Chr09:14505889..14505913 (25 bp)
AACTGCTTAGCAACAGTCGGACAAG
NONE
OsAffx.32199.1.A1_x_at--194--100311Chr10:10475019..10475043 (25 bp)
TAGAGCCGGGTCTAAGTGTTGGCTA
NONE
OsAffx.32199.1.A1_x_at--198--87910Chr10:10475035..10475059 (25 bp)
TGTTGGCTAGGTAAACGCCCCGTAG
NONE
OsAffx.32199.1.A1_x_at--706--100512Chr10:10475069..10475093 (25 bp)
TAGTTATGAACCCTGTGGACCACCC
NONE
Target Sequence 
GAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACGTGGAAGGGGTGGGCAATTAGC
TAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAAGGTAAATCGGCCACTTTAAGATTACCATCTGGGGAGGTCC
GTTTGGTATCCCAAAACTGCTTAGCAACAGTCGGACAAGTGGGTAATGTTGGGGTGAACCAAAAAAGTTTGGGTAGAGCC
GGGTCTAAGTGTTGGCTAGGTAAACGCCCCGTAGTAAGAGGGGTAGTTATGAACCCTGTGGACCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32199.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis