Browse Element(s) Details


OsAffx.32195.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps3
TID=OsAffx.32195.1
CNT=1
FEA=DNA_66
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S3 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g167809/11Chloroplast 30S ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32195.1.S1_x_at--717--5396Chr09:14507450..14507474 (25 bp)
GAAGCAGACTCAAGTTTCGAAGTAA
NONE
OsAffx.32195.1.S1_x_at--868--2956Chr09:14507491..14507515 (25 bp)
AATGGACTCAGGCTCAAGTTCCGAA
NONE
OsAffx.32195.1.S1_x_at--644--6476Chr09:14507549..14507573 (25 bp)
GATACAATCCACGTCATAATCCATA
NONE
OsAffx.32195.1.S1_x_at--618--3418Chr09:14507657..14507681 (25 bp)
CAGAGACTTAATATTGGGATCGAAA
NONE
OsAffx.32195.1.S1_x_at--750--1416Chr09:14507699..14507723 (25 bp)
AGACAACCTAACATTCTTGCAGAAT
NONE
OsAffx.32195.1.S1_x_at--262--297Chr09:14507745..14507769 (25 bp)
ATAGAGTTTCATTCCGAAAGGCAAT
NONE
OsAffx.32195.1.S1_x_at--949--7038Chr09:14507819..14507843 (25 bp)
GTAAAAATTGCAGGCCGTCTCGCGG
NONE
OsAffx.32195.1.S1_x_at--1151--10438Chr09:14507826..14507850 (25 bp)
TTGCAGGCCGTCTCGCGGGAAAAGA
NONE
OsAffx.32195.1.S1_x_at--534--2751NONE
AAGAAATTGCGCGTGCCGAGTGCAT
NONE
OsAffx.32195.1.S1_x_at--680--9151NONE
TGCGCGTGCCGAGTGCATCAAAAAA
NONE
OsAffx.32195.1.S1_x_at--197--4196Chr09:14507889..14507913 (25 bp)
CCCTCCAAACAATTCGCGCTAAAAT
NONE
Target Sequence 
GAAGCAGACTCAAGTTTCGAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATAT
AGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAA
TCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAA
GAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAAT
GAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAG
AAATTGCGCGTGCCGAGTGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32195.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis