Browse Element(s) Details


Os.46267.1.S1_x_at

Description gb:CR287877
DB_XREF= gi:44674443
DB_XREF=CR287877
CLONE=y678g07p5
TID=Os.46267.1
CNT=29
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) chloroplast 50S ribosomal protein L22 (P0453E03.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1678011/11Chloroplast 30S ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46267.1.S1_x_at--523--9936Chr09:14507388..14507412 (25 bp)
TACGGAATTGTATCAAGAACTATAT
NONE
Os.46267.1.S1_x_at--63--296Chr09:14507447..14507471 (25 bp)
ATAGAAGCAGACTCAAGTTTCGAAG
NONE
Os.46267.1.S1_x_at--689--8536Chr09:14507493..14507517 (25 bp)
TGGACTCAGGCTCAAGTTCCGAAGT
NONE
Os.46267.1.S1_x_at--1083--9616Chr09:14507498..14507522 (25 bp)
TCAGGCTCAAGTTCCGAAGTAATTA
NONE
Os.46267.1.S1_x_at--950--7038Chr09:14507819..14507843 (25 bp)
GTAAAAATTGCAGGCCGTCTCGCGG
NONE
Os.46267.1.S1_x_at--1150--10438Chr09:14507826..14507850 (25 bp)
TTGCAGGCCGTCTCGCGGGAAAAGA
NONE
Os.46267.1.S1_x_at--1085--8159Chr09:14507843..14507867 (25 bp)
GGAAAAGAAATTGCGCGTGCCGAAT
NONE
Os.46267.1.S1_x_at--989--5599Chr09:14507849..14507873 (25 bp)
GAAATTGCGCGTGCCGAATGCATCA
NONE
Os.46267.1.S1_x_at--497--10719Chr09:14507853..14507877 (25 bp)
TTGCGCGTGCCGAATGCATCAAAAA
NONE
Os.46267.1.S1_x_at--595--4959Chr09:14507868..14507892 (25 bp)
GCATCAAAAAAGGTAGACTTCCCCT
NONE
Os.46267.1.S1_x_at--118--10617Chr09:14507901..14507925 (25 bp)
TTCGCGCTAAAATTGATTATTGCTG
NONE
Target Sequence 
TACGGAATTGTATCAAGAACTATATACAAAAGAATAGGAAAAAGGGCTCGAATAGAAAAATAGAAGCAGACTCAAGTTTC
GAAGTAATTACACATAATAAAAAAATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAAT
CGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGANCAATCGAAGAATTAGAGAAAG
ATCTACAAAAAGAANTTAATTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAANTGAAAGANCCTTATAGNCANCCT
AACATTCTTNCAGAATATATANCTTNCCAATTAAAAAATAGAGTTTCATTCCGAAAGNCAATNAAAAAANCCNTTGAATN
AACTAAAAAAANAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAAT
GCATCAAAAAAGGTAGACTTCCCCTCCAAAAAATTCGCGCTAAAATTGATTATTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46267.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis