Browse Element(s) Details


Os.46437.1.S1_s_at

Description gb:AK060382.1
DB_XREF= gi:32970400
TID=Os.46437.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.46437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-009-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-E08, full insert sequence.
FL= gb:AK060382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1678011/11Chloroplast 30S ribosomal protein S3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46437.1.S1_s_at--425--10019Chr09:14507979..14508003 (25 bp)
TAGACGAAGAATAACCAACCCTGTC
NONE
Os.46437.1.S1_s_at--68--5778Chr09:14507981..14508005 (25 bp)
GACGAAGAATAACCAACCCTGTCTT
NONE
Os.46437.1.S1_s_at--22--52510Chr09:14507987..14508011 (25 bp)
GAATAACCAACCCTGTCTTCCCATT
NONE
Os.46437.1.S1_s_at--168--3898Chr09:11947307..11947331 (25 bp)
CTGTCTTCCCATTCTGTTCAGTAAT
NONE
Os.46437.1.S1_s_at--773--8697Chr09:11947308..11947332 (25 bp)
TGTCTTCCCATTCTGTTCAGTAATA
NONE
Os.46437.1.S1_s_at--365--7137Chr09:11947309..11947333 (25 bp)
GTCTTCCCATTCTGTTCAGTAATAG
NONE
Os.46437.1.S1_s_at--87--3638Chr09:11947311..11947335 (25 bp)
CTTCCCATTCTGTTCAGTAATAGAA
NONE
Os.46437.1.S1_s_at--334--10658Chr09:11947312..11947336 (25 bp)
TTCCCATTCTGTTCAGTAATAGAAT
NONE
Os.46437.1.S1_s_at--497--2999Chr09:14508033..14508057 (25 bp)
AATGACAAGAGCCTTATTTTCCCTA
NONE
Os.46437.1.S1_s_at--882--659Chr09:14508034..14508058 (25 bp)
ATGACAAGAGCCTTATTTTCCCTAA
NONE
Os.46437.1.S1_s_at--455--8959Chr09:14508035..14508059 (25 bp)
TGACAAGAGCCTTATTTTCCCTAAA
NONE
Target Sequence 
TAGACGAAGAATAACCAACCCTGTCTTCCCATTCTGTTCAGTAATAGAATAAAAAATGACAAGAGCCTTATTTTCCCTAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46437.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis