Browse Element(s) Details


Os.26688.1.S1_s_at

Description gb:AK058501.1
DB_XREF= gi:32968519
TID=Os.26688.1
CNT=77
FEA=FLmRNA
TIER=FL+Stack
STK=28
UG=Os.26688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ribosomal protein L14 (P0557A01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F04, full insert sequence.
FL= gb:AK071967.1 gb:AK105308.1 gb:AK059459.1 gb:AK058501.1 gb:AK104024.1 gb:AK063122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1678011/11Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os11g346801/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0009507cellular_componentchloroplast
GO:0003676molecular_functionnucleic acid binding
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26688.1.S1_s_at--356--2279Chr09:14508321..14508345 (25 bp)
AAATCTATCATATACGTGTAGCAAC
NONE
Os.26688.1.S1_s_at--376--3998Chr09:14508335..14508359 (25 bp)
CGTGTAGCAACTGCAATTTTTTCTT
NONE
Os.26688.1.S1_s_at--641--10679Chr09:14508461..14508485 (25 bp)
TTCCAATATGTATGGTCTATGAATT
NONE
Os.26688.1.S1_s_at--433--5816Chr09:14508593..14508617 (25 bp)
GAGCGTCCCGAGTTAATAAAACTGA
NONE
Os.26688.1.S1_s_at--464--3118Chr09:14508636..14508660 (25 bp)
AATTTTTTGGAAGCTCCATTGCGAG
NONE
Os.26688.1.S1_s_at--618--4798Chr09:14508648..14508672 (25 bp)
GCTCCATTGCGAGATTCAAACCTAA
NONE
Os.26688.1.S1_s_at--722--5398Chr09:14508684..14508708 (25 bp)
GAAGCAGTGGGAACGACAGAACCTA
NONE
Os.26688.1.S1_s_at--750--5457Chr09:14508694..14508718 (25 bp)
GAACGACAGAACCTATGACTGGATA
NONE
Os.26688.1.S1_s_at--719--10219Chr09:14508833..14508857 (25 bp)
TATTCGCCCGCGAAATTTTTATTGA
NONE
Os.26688.1.S1_s_at--981--8979Chr09:14508855..14508879 (25 bp)
TGAATTAGAATACTTTACCGCGATT
NONE
Os.26688.1.S1_s_at--80--97910Chr09:14508865..14508889 (25 bp)
TACTTTACCGCGATTCAATAAGAGT
NONE
Target Sequence 
AAATCTATCATATACGTGTAGCAACTGCAATTTTTTCTTTAAAAAAAAATAGGATTCTAAGTTGTGAAGCAAAACTAAAG
GGGATGTAGATAAAAGGAAGGATGATAGAAAGAAGGAAGAGAAATAAGAAAGATATAGGATTCCAATATGTATGGTCTAT
GAATTACATCATAAAAAGCAATGTGATAAAGCATCAATATAATAAAAATAACAGAGAATTCGAAATCGTAATTTGATTGN
AAACANAGAAATACNAAATTTCAAGGAATAACANAAGAGCGTCCCGAGTTAATAAAACTGAGAAATTGACTCGGAAAGAA
ATTTTTTGGAAGCTCCATTGCGAGATTCAAACCTAACCATTAAAGGAGAAGCAGTGGGAACGACAGAACCTATGACTGGA
TAGGATTTTCTTGAAAAGAATCCCAATACTTCATTGGGTGGGATGGCGGAACAAACCAAAAAAATTGTCTTATTTGATAA
GGTTATGAATTAACAAATAAGACAGGAAAGAGTAAATATTCGCCCGCGAAATTTTTATTGAATTAGAATACTTTACCGCG
ATTCAATAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26688.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis