Browse Element(s) Details


OsAffx.32200.1.A1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpl23
TID=OsAffx.32200.1
CNT=1
FEA=DNA_71
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L23 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein L23
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1677411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32200.1.A1_x_at--1048--28714Chr10:22442202..22442226 (25 bp)
AAGGGTAATGATCATACGTCTGTAA
NONE
OsAffx.32200.1.A1_x_at--1110--18910Chr10:22442217..22442241 (25 bp)
ACGTCTGTAATGCATTGTATGTCCT
NONE
OsAffx.32200.1.A1_x_at--996--87510Chr10:22442232..22442256 (25 bp)
TGTATGTCCTAGAATAGGGCCCATT
NONE
OsAffx.32200.1.A1_x_at--1002--14110Chr10:22442242..22442266 (25 bp)
AGAATAGGGCCCATTCTTCTACCCT
NONE
OsAffx.32200.1.A1_x_at--802--10298Chr10:10558508..10558532 (25 bp)
TTTCCGGGTAGTCGATGGCTATTCA
NONE
OsAffx.32200.1.A1_x_at--508--6239Chr10:22442279..22442303 (25 bp)
GATGGCTATTCACAGCTACTACCTT
NONE
OsAffx.32200.1.A1_x_at--654--9678Chr10:22442288..22442312 (25 bp)
TCACAGCTACTACCTTAACACCAAA
NONE
OsAffx.32200.1.A1_x_at--980--2159Chr10:22442305..22442329 (25 bp)
ACACCAAAGAAGAGTTCGACCCAAT
NONE
OsAffx.32200.1.A1_x_at--567--6719Chr10:10558560..10558584 (25 bp)
GTTCGACCCAATGCTTTATTTCTGT
NONE
OsAffx.32200.1.A1_x_at--601--199Chr10:10558577..10558601 (25 bp)
ATTTCTGTCTTAGTGAATCCCGATT
NONE
OsAffx.32200.1.A1_x_at--993--25910Chr10:22442350..22442374 (25 bp)
AATCCCGATTCGACATTAAAAGTAT
NONE
Target Sequence 
AAGGGTAATGATCATACGTCTGTAATGCATTGTATGTCCTAGAATAGGGCCCATTCTTCTACCCTTTCCGGGTAGTCGAT
GGCTATTCACAGCTACTACCTTAACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCTTAGTGAATCCCGATTCG
ACATTAAAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32200.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis