Browse Element(s) Details


OsAffx.32330.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=petD
TID=OsAffx.32330.1
CNT=1
FEA=DNA_58
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome bf (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=cytochrome bf
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1679011/11DNA-directed RNA polymerase alpha chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed
LOC_Os04g16774OsAffx.32196.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32199.1.S1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32287.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32195.1.A1_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32200.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32197.1.A1_x_at11/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.32233.1.A1_x_at9/114+9131675..9135405expressed protein
LOC_Os04g16774OsAffx.20465.1.A1_x_at6/114+9131675..9135405expressed protein
LOC_Os04g16780OsAffx.32287.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32337.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32196.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46437.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.46267.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780Os.26688.1.S1_s_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32197.1.S1_x_at11/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32195.1.S1_x_at9/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16780OsAffx.32199.1.A1_x_at6/114+9133179..9136938Chloroplast 30S ribosomal protein S3, putative, expressed
LOC_Os04g16790OsAffx.32331.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.2.S1_s_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32330.1.A1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790Os.26455.1.S1_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32332.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32333.1.S1_x_at11/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16790OsAffx.32334.1.S1_x_at5/114+9138338..9141153DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g16800OsAffx.30473.1.S1_x_at11/114+9156196..9158627Photosystem II D2 protein, putative
LOC_Os04g16800OsAffx.30473.2.S1_x_at9/114+9156196..9158627Photosystem II D2 protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32330.1.A1_at--193--7077Chr08:9262970..9262994 (25 bp)
GTAATGTTGCTCCAATACCTAACCA
NONE
OsAffx.32330.1.A1_at--1104--2558Chr08:9263022..9263046 (25 bp)
AACGGTTGTAGCTACTGGGCGACGA
NONE
OsAffx.32330.1.A1_at--657--1016Chr08:9263082..9263106 (25 bp)
AGGTACTGTCAATAAGCCCGTCGGC
NONE
OsAffx.32330.1.A1_at--791--4517Chr08:9263097..9263121 (25 bp)
GCCCGTCGGCACAGAAACCATTAAG
NONE
OsAffx.32330.1.A1_at--291--6977Chr08:9263178..9263202 (25 bp)
GTACCACTCGGGTAATATTTCCAGA
NONE
OsAffx.32330.1.A1_at--545--1237Chr08:9263205..9263229 (25 bp)
AGTTGCAAACGGATCCGCCGGTTCA
NONE
OsAffx.32330.1.A1_at--409--9655Chr08:9263227..9263251 (25 bp)
TCACCAATCATTGACGGCTCGAGAA
NONE
OsAffx.32330.1.A1_at--394--9377Chr08:9263245..9263269 (25 bp)
TCGAGAACCGCTAAACCTACATTAC
NONE
OsAffx.32330.1.A1_at--700--9815Chr08:9263307..9263331 (25 bp)
TAAAAGATCGTTGGGCCACGCGGGT
NONE
OsAffx.32330.1.A1_at--236--6677Chr08:9263330..9263354 (25 bp)
GTTCCCCGTAATAATTATGTCCCAT
NONE
OsAffx.32330.1.A1_at--953--10116Chr08:9263345..9263369 (25 bp)
TATGTCCCATCCCTTTAGCTAATTT
NONE
Target Sequence 
GTAATGTTGCTCCAATACCTAACCAAAGAGCTACTGCAGTACCGATTAAAAAAACGGTTGTAGCTACTGGGCGACGAAAT
GGATTTTGGAATTTATTGACATTCTCTAGAAAAGGTACTGTCAATAAGCCCGTCGGCACAGAAACCATTAAGAGAACGCC
CAATAACTTATTAGGTACTGTACGGAGTATTTGAAACACGGGAAAGAAGTACCACTCGGGTAATATTTCCAGAGGAGTTG
CAAACGGATCCGCCGGTTCACCAATCATTGACGGCTCGAGAACCGCTAAACCTACATTACATGCAATAGTACCTAGAATT
ACTACTGGAAAAATATATAAAAGATCGTTGGGCCACGCGGGTTCCCCGTAATAATTATGTCCCATCCCTTTAGCTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32330.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis