Browse Element(s) Details


OsAffx.26029.1.S1_at

Description tigr:9632.m01301
TID=OsAffx.26029.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1424011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14200NANA4+7939194..7940132hypothetical protein
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26029.1.S1_at--1022--1031Chr04:7964949..7964973 (25 bp)
AGGTGCTCAGCATCGAGGAGGGCAA
LOC_Os04g14240
OsAffx.26029.1.S1_at--315--4231Chr04:7964916..7964940 (25 bp)
CCGTCGTCGTGGAGACCGAGGAGTT
LOC_Os04g14240
OsAffx.26029.1.S1_at--38--991Chr04:7964898..7964922 (25 bp)
AGGAGTTGGCGGCAGTTGTCGTTGA
LOC_Os04g14240
OsAffx.26029.1.S1_at--292--8011Chr04:7964864..7964888 (25 bp)
GGAGGCGCTCGGTATCAAGGAGGGC
LOC_Os04g14240
OsAffx.26029.1.S1_at--926--8411Chr04:7964831..7964855 (25 bp)
GGCCGTCCTCGTGGAGGCCAAGGAG
LOC_Os04g14240
OsAffx.26029.1.S1_at--1123--3911Chr04:7964753..7964777 (25 bp)
CGGCCATTGTCGTGGAGACCAAGGA
LOC_Os04g14240
OsAffx.26029.1.S1_at--28--3611Chr04:7964749..7964773 (25 bp)
CATTGTCGTGGAGACCAAGGAGGCA
LOC_Os04g14240
OsAffx.26029.1.S1_at--440--6131Chr04:7964540..7964706 (25 bp)
GAGGGCAAGGAGACGTTTTCAACCA
LOC_Os04g14240
OsAffx.26029.1.S1_at--653--2911Chr04:7964534..7964700 (25 bp)
AAGGAGACGTTTTCAACCATTGCTT
LOC_Os04g14240
OsAffx.26029.1.S1_at--620--10491Chr04:7964523..7964547 (25 bp)
TTCAACCATTGCTTTTGGACCATTA
LOC_Os04g14240
OsAffx.26029.1.S1_at--360--3592Chr04:7964517..7964541 (25 bp)
CATTGCTTTTGGACCATTAAAGGTA
LOC_Os04g14240
Target Sequence 
AGGTGCTCAGCATCGAGGAGGGCAAGGAGGCGGCCGTCGTCGTGGAGACCGAGGAGTTGGCGGCAGTTGTCGTTGAGGGA
GGGGAGGAGGCGCTCGGTATCAAGGAGGGCGGGGAGGCGGCCGTCCTCGTGGAGGCCAAGGAGGAGGAGGTGCTCAGCAT
CGGGGAGGCGGCCATTGTCGTGGAGACCAAGGAGGCAGCCATCGTCGTCGAGGCCAAGGAGAAGGCGGCGGTAGTTGTCG
AGGGCAAGGAGACGTTTTCAACCATTGCTTTTGGACCATTAAAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis