Browse Element(s) Details


OsAffx.19019.1.S1_at

Description tigr:9639.m02309
TID=OsAffx.19019.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2590011/11hAT family dimerisation domain containing protein, putative
LOC_Os04g142201/11NB-ARC domain containing protein, expressed
LOC_Os10g140401/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25880OsAffx.19020.1.S1_at10/1111+14250021..14253337hypothetical protein
LOC_Os11g25890OsAffx.31136.1.S1_at11/1111+14269882..14270094hypothetical protein
LOC_Os11g25900OsAffx.19019.1.S1_at11/1111+14275096..14276259hAT family dimerisation domain containing protein, putative
LOC_Os11g25910OsAffx.31135.1.S1_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25910OsAffx.31135.1.S1_x_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25920OsAffx.19018.1.S1_at11/1111+14285190..14289613expressed protein
LOC_Os11g25920OsAffx.19018.1.S1_x_at11/1111+14285190..14289613expressed protein
LOC_Os11g25930NANA11+14291168..14295196retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25940NANA11+14296810..14297211retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.1.S1_x_at2/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950Os.53479.1.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified
LOC_Os11g25950OsAffx.31069.2.S1_x_at1/1111+14298165..14301032retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19019.1.S1_at--839--1011Chr11:14275138..14275162 (25 bp)
AGGTCTGATGGGTGTGTTGCATTCC
LOC_Os11g25900
OsAffx.19019.1.S1_at--904--3671Chr11:14275175..14275199 (25 bp)
CTTTGTTCTGCAATAGATATGGTCT
LOC_Os11g25900
OsAffx.19019.1.S1_at--993--771Chr11:14275226..14275250 (25 bp)
ATGTGCCTTATGGAAGATCTCAAAG
LOC_Os11g25900
OsAffx.19019.1.S1_at--318--6411Chr11:14275241..14275265 (25 bp)
GATCTCAAAGGTTTGCACGAAATCA
LOC_Os11g25900
OsAffx.19019.1.S1_at--365--5351Chr11:14275359..14275383 (25 bp)
GAAGTTGCTTTCCTGTATGGCAGCC
LOC_Os11g25900
OsAffx.19019.1.S1_at--1133--6911Chr11:14275373..14275397 (25 bp)
GTATGGCAGCCTTGAATCCAACTAA
LOC_Os11g25900
OsAffx.19019.1.S1_at--50--5271Chr11:14275386..14275410 (25 bp)
GAATCCAACTAACTCATTTGCATCT
LOC_Os11g25900
OsAffx.19019.1.S1_at--57--9071Chr11:14275404..14275427 (24 bp)
TGCATCTTTTGGTACACAGAAGGTT
LOC_Os11g25900
OsAffx.19019.1.S1_at--620--88910Chr11:14276124..14276190 (25 bp)
TGAGTTCAAGGATTGTTGCCGCAAC
LOC_Os11g25900
OsAffx.19019.1.S1_at--226--66910Chr12:7743388..7743425 (25 bp)
GTTGCCGCAACATATTAATGCCTCT
NONE
OsAffx.19019.1.S1_at--409--30328Chr12:7743409..7743428 (20 bp)
AATGCCTCTACAAAGTGCCTCTATT
NONE
Target Sequence 
AGGTCTGATGGGTGTGTTGCATTCCTTGAAAGGGTCACTTTGTTCTGCAATAGATATGGTCTTGAATTTCATGAAATGGA
TGGTGTTTATGTGCCTTATGGAAGATCTCAAAGGTTTGCACGAAATCAAACGAATGATGACCACTTTAGAAGAGAAGTAT
ATATTGGGATCATTGATCAAATTAGCCAAGAATTTGACAATCACTTTGACGAGGTTAATATGAAGTTGCTTTCCTGTATG
GCAGCCTTGAATCCAACTAACTCATTTGCATCTTTTGGTACACAGAAGGTTGAGATGGTTAGTGCATTGAAGATAAAAAT
AGTTGACTTAGGAGGTCATGAGTTCAAGGATTGTTGCCGCAACATATTAATGCCTCTACAAAGTGCCTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19019.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis