Browse Element(s) Details


OsAffx.31136.1.S1_at

Description tigr:9639.m02310
TID=OsAffx.31136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2589011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25874NANA11+14247701..14249116hypothetical protein
LOC_Os11g25880OsAffx.19020.1.S1_at10/1111+14250021..14253337hypothetical protein
LOC_Os11g25890OsAffx.31136.1.S1_at11/1111+14269882..14270094hypothetical protein
LOC_Os11g25900OsAffx.19019.1.S1_at11/1111+14275096..14276259hAT family dimerisation domain containing protein, putative
LOC_Os11g25910OsAffx.31135.1.S1_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25910OsAffx.31135.1.S1_x_at11/1111+14282539..14283151hypothetical protein
LOC_Os11g25920OsAffx.19018.1.S1_at11/1111+14285190..14289613expressed protein
LOC_Os11g25920OsAffx.19018.1.S1_x_at11/1111+14285190..14289613expressed protein
LOC_Os11g25930NANA11+14291168..14295196retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31136.1.S1_at--1047--1271Chr11:14270012..14270036 (25 bp)
AGATCCAACCCAACCGGAGTATATT
LOC_Os11g25890
OsAffx.31136.1.S1_at--367--6351Chr11:14270011..14270035 (25 bp)
GATCCAACCCAACCGGAGTATATTT
LOC_Os11g25890
OsAffx.31136.1.S1_at--882--3231Chr11:14270002..14270026 (25 bp)
CAACCGGAGTATATTTTCCGACGAG
LOC_Os11g25890
OsAffx.31136.1.S1_at--58--5431Chr11:14269973..14269997 (25 bp)
GAACCATCGTCGCTAACAATTCGAC
LOC_Os11g25890
OsAffx.31136.1.S1_at--390--7231Chr11:14269965..14269989 (25 bp)
GTCGCTAACAATTCGACGTGTCGAG
LOC_Os11g25890
OsAffx.31136.1.S1_at--1000--91Chr11:14269955..14269979 (25 bp)
ATTCGACGTGTCGAGATCGTCCAAG
LOC_Os11g25890
OsAffx.31136.1.S1_at--458--1911Chr11:14269950..14269974 (25 bp)
ACGTGTCGAGATCGTCCAAGCCTCA
LOC_Os11g25890
OsAffx.31136.1.S1_at--1149--6031Chr11:14269943..14269967 (25 bp)
GAGATCGTCCAAGCCTCAAGACCTT
LOC_Os11g25890
OsAffx.31136.1.S1_at--400--5811Chr11:14269917..14269941 (25 bp)
GACGCCGCATACATTTGCTCTCAAG
LOC_Os11g25890
OsAffx.31136.1.S1_at--999--4511Chr11:14269914..14269938 (25 bp)
GCCGCATACATTTGCTCTCAAGACG
LOC_Os11g25890
OsAffx.31136.1.S1_at--1010--4111Chr11:14269912..14269936 (25 bp)
CGCATACATTTGCTCTCAAGACGGA
LOC_Os11g25890
Target Sequence 
AGATCCAACCCAACCGGAGTATATTTTCCGACGAGATCGGAACCATCGTCGCTAACAATTCGACGTGTCGAGATCGTCCA
AGCCTCAAGACCTTCGACGCCGCATACATTTGCTCTCAAGACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis