Browse Element(s) Details


Os.27666.1.A1_at

Description gb:CB682522
DB_XREF= gi:29686247
DB_XREF=OSJNEf09P07.r
CLONE=OSJNEf09P07
TID=Os.27666.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27666 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176187.1 (A.thaliana) disease resistance protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1422011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14190Os.53153.1.S1_at11/114+7927410..7929579TRAF-type zinc finger family protein, expressed
LOC_Os04g14200NANA4+7939194..7940132hypothetical protein
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27666.1.A1_at--853--6771Chr04:7953488..7953512 (25 bp)
GTTAGCATCACATGTGCCATACCTC
LOC_Os04g14220
Os.27666.1.A1_at--1142--1212Chr04:7953422..7953446 (25 bp)
AGTTCTTTCTGCAGGGTGTTTTCCA
LOC_Os04g14220
Os.27666.1.A1_at--441--7731Chr04:7953353..7953377 (25 bp)
GGTGGAGATCGAAGACCGTGCCCTT
LOC_Os04g14220
Os.27666.1.A1_at--959--7831Chr04:7953281..7953305 (25 bp)
GGTACCTGAAGGCATCGAGTTTCTT
LOC_Os04g14220
Os.27666.1.A1_at--84--2751Chr04:7953247..7953271 (25 bp)
AAGAAGCTATGGCTGCTGCATCTAC
LOC_Os04g14220
Os.27666.1.A1_at--1030--8111Chr04:7953218..7953242 (25 bp)
GGACTTCAACACTTACTGGGAGAGC
LOC_Os04g14220
Os.27666.1.A1_at--285--871Chr04:7953175..7953199 (25 bp)
ATGGCGCATGTACAGGAGCTCTACC
LOC_Os04g14220
Os.27666.1.A1_at--331--1591Chr04:7953159..7953183 (25 bp)
AGCTCTACCGCATCTAGGAGTGACA
LOC_Os04g14220
Os.27666.1.A1_at--762--231Chr04:7953135..7953159 (25 bp)
ATATTTTACTCTTCCTTCTGCATAA
LOC_Os04g14220
Os.27666.1.A1_at--52--3231Chr04:7953097..7953121 (25 bp)
CAAGATGCCTCTGCACAGTACTAAA
LOC_Os04g14220
Os.27666.1.A1_at--144--9851Chr04:7953076..7953100 (25 bp)
TAAATAACGCATCTTGTCCTGCCCA
LOC_Os04g14220
Target Sequence 
GTTAGCATCACATGTGCCATACCTCACCTTTCTAAGACTAAACAGGGTGTATACTACAAAGACATTAGTTCTTTCTGCAG
GGTGTTTTCCAGAGCTAAAGACACTCGTTTTGAAACACATGCCGGATGTCAACAAGGTGGAGATCGAAGACCGTGCCCTT
CCACGGATTGAAGGTTTGCACATTGTGTCTTTGTACAATGTGAAAAAGGTACCTGAAGGCATCGAGTTTCTTCGCTCCTT
GAAGAAGCTATGGCTGCTGCATCTACATAAGGACTTCAACACTTACTGGGAGAGCAATGGAATGCACGAGAAAATGGCGC
ATGTACAGGAGCTCTACCGCATCTAGGAGTGACATATTTTACTCTTCCTTCTGCATAACACGTACTCGTGCCAAGATGCC
TCTGCACAGTACTAAATAACGCATCTTGTCCTGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27666.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis