Browse Element(s) Details


OsAffx.26030.1.S1_at

Description tigr:9632.m01302
TID=OsAffx.26030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1425011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g14210Os.52765.1.S1_at4/114+7949490..7951366hypothetical protein
LOC_Os04g14220Os.27666.1.A1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220Os.52537.1.S1_at11/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14220OsAffx.19019.1.S1_at1/114+7952923..7963717NB-ARC domain containing protein, expressed
LOC_Os04g14240OsAffx.26029.1.S1_at11/114+7964246..7965016hypothetical protein
LOC_Os04g14250OsAffx.26030.1.S1_at11/114+7965488..7969649hypothetical protein
LOC_Os04g14250Os.51283.1.S1_at6/114+7965488..7969649hypothetical protein
LOC_Os04g14250OsAffx.10309.1.S1_x_at1/114+7965488..7969649hypothetical protein
LOC_Os04g14260OsAffx.25936.7.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.1.S1_s_at11/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.2.S1_x_at3/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14260OsAffx.25936.5.S1_x_at2/114+7970583..7973140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14270NANA4+7976000..7976638hypothetical protein
LOC_Os04g14280Os.10827.1.S1_x_at8/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14280Os.46055.2.S1_x_at5/114+7977228..7980054transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g14290OsAffx.13815.1.S1_at9/114+7986306..7987295hypothetical protein
LOC_Os04g14304Os.50770.1.S1_at11/114+7988860..7998379Calcium binding EGF domain containing protein, expressed
LOC_Os04g14304OsAffx.12953.1.S1_at1/114+7988860..7998379Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26030.1.S1_at--886--7631Chr04:7966797..7966820 (24 bp)
GGGACGTAGCACTGTGTATCCTAGT
LOC_Os04g14250
OsAffx.26030.1.S1_at--946--6871Chr04:7966811..7966835 (25 bp)
GTATCCTAGTGGTTAGGGTCACACC
LOC_Os04g14250
OsAffx.26030.1.S1_at--649--1051Chr04:7966825..7966849 (25 bp)
AGGGTCACACCAACCTTTTTGTCTG
LOC_Os04g14250
OsAffx.26030.1.S1_at--548--7171Chr04:7966845..7966869 (25 bp)
GTCTGAAGTCGCAAAGGGCATGGCT
LOC_Os04g14250
OsAffx.26030.1.S1_at--1130--851Chr04:7966864..7966888 (25 bp)
ATGGCTTACATACCCTCTAGCATAG
LOC_Os04g14250
OsAffx.26030.1.S1_at--225--7351Chr04:7966894..7966918 (25 bp)
GTGCACAACGTAGACCTCATGGCTG
LOC_Os04g14250
OsAffx.26030.1.S1_at--499--5411Chr04:7966926..7967439 (25 bp)
GAAGCTGATTCGATCCAACATTCGA
LOC_Os04g14250
OsAffx.26030.1.S1_at--1095--8951Chr04:7967448..7967472 (25 bp)
TGAAAGCATGGACAGCTGCGCCTGC
LOC_Os04g14250
OsAffx.26030.1.S1_at--872--4551Chr04:7967465..7967489 (25 bp)
GCGCCTGCGACAGCGAGCATCAGAA
LOC_Os04g14250
OsAffx.26030.1.S1_at--374--2411Chr04:7968892..7969404 (25 bp)
AAACACCTGGCGATTACTTCTTGGG
LOC_Os04g14250
OsAffx.26030.1.S1_at--614--2731Chr04:7969439..7969463 (25 bp)
AAGCAATCCGCCGATCAGAACAGAT
LOC_Os04g14250
Target Sequence 
GGGACGTAGCACTGTGTATCCTAGTGGTTAGGGTCACACCAACCTTTTTGTCTGAAGTCGCAAAGGGCATGGCTTACATA
CCCTCTAGCATAGAAAGGGTGCACAACGTAGACCTCATGGCTGGATATGCGAAGCTGATTCGATCCAACATTCGATCCAT
ACATGAAAGCATGGACAGCTGCGCCTGCGACAGCGAGCATCAGAATGTTGAGGAGGTTTTCTTCTTAGGGTACTTTGCTG
GCAAACCAGCGAAACCCAACGACAAAGAACAACAGGCCGGTGATGAGGAGACGCAAGCTGTTGATGCACAAACACCTGGC
GATTACTTCTTGGGCCCTCCAGCAAACCTTCAACAGCAGCCAGCAGCGAAGCAATCCGCCGATCAGAACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis