Browse Element(s) Details


Os.51244.1.S1_at

Description gb:AK062325.1
DB_XREF= gi:32972343
TID=Os.51244.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D03, full insert sequence.
FL= gb:AK062325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3471011/11expressed protein
LOC_Os12g080701/11TRAF-type zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004659molecular_functionprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51244.1.S1_at--716--4691Chr05:20508535..20508559 (25 bp)
GCGGCACATGGCGATGATGTTTTTT
LOC_Os05g34710
Os.51244.1.S1_at--983--4118Chr12:19198578..19198602 (25 bp)
CGCTTGGTGAGTTCGGCTCGGATTC
NONE
Os.51244.1.S1_at--279--7071Chr05:20508754..20508778 (25 bp)
GTAATGCTAAAAGTGCCGGTTCTAT
LOC_Os05g34710
Os.51244.1.S1_at--385--10211Chr05:20508776..20508800 (25 bp)
TATTTTCGTTATAGGTGTCGCTTAG
LOC_Os05g34710
Os.51244.1.S1_at--549--7231Chr05:20508792..20508816 (25 bp)
GTCGCTTAGTAGTATTGGTGCCAGA
LOC_Os05g34710
Os.51244.1.S1_at--938--5511Chr05:20508818..20508842 (25 bp)
GAAAATCTGTTACCTATGGCTCTCT
LOC_Os05g34710
Os.51244.1.S1_at--765--10071Chr05:20508832..20508856 (25 bp)
TATGGCTCTCTATGAACCGATACCT
LOC_Os05g34710
Os.51244.1.S1_at--966--8951Chr05:20508844..20508868 (25 bp)
TGAACCGATACCTTTGGCACTTTTT
LOC_Os05g34710
Os.51244.1.S1_at--124--2051Chr05:20508862..20508886 (25 bp)
ACTTTTTTAAGTAGTGTCTGCACGA
LOC_Os05g34710
Os.51244.1.S1_at--500--7451Chr05:20508875..20508899 (25 bp)
GTGTCTGCACGATTCCGAAAGGATC
LOC_Os05g34710
Os.51244.1.S1_at--1001--6951Chr05:20508906..20508930 (25 bp)
GTAGCTAGGGTTTTTCTTGTGTGAA
LOC_Os05g34710
Target Sequence 
GCGGCACATGGCGATGATGTTTTTTGTGAATTTGTTGATGAATTTGTTGTTGAATATGTTCATTATGTTATGTCAATTTA
TTTTGGTGGTGATTTGTGAATGATTTTGGGGTTTGGAGATTTAGTTTGATTTGGAGAAGGGCGTATGCGCGGTGACGGCG
CTTGGTGAGTTCGGCTCGGATTCGAGCCGGCTCTCTCTCTTTTTTTTTTTCTGGATTGGGTAATGCTAAAAGTGCCGGTT
CTATTTTCGTTATAGGTGTCGCTTAGTAGTATTGGTGCCAGATGAAAATCTGTTACCTATGGCTCTCTATGAACCGATAC
CTTTGGCACTTTTTTAAGTAGTGTCTGCACGATTCCGAAAGGATCATCAAAGTAGCTAGGGTTTTTCTTGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis