Browse Element(s) Details


Os.18517.1.S1_at

Description gb:AK073986.1
DB_XREF= gi:32984009
TID=Os.18517.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18517 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072E16, full insert sequence.
FL= gb:AK073986.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3467011/11KH domain-containing quaking protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18517.1.S1_at--1128--2531Chr05:20486215..20486239 (25 bp)
AACTCAACTGGGATGAAACGCGCTA
LOC_Os05g34670
Os.18517.1.S1_at--376--2371Chr05:20486200..20486224 (25 bp)
AAACGCGCTAAGACAGGACGGTGAT
LOC_Os05g34670
Os.18517.1.S1_at--1010--491Chr05:20486177..20486201 (25 bp)
ATCGGAGATCGCGACATCTGGAAAT
LOC_Os05g34670
Os.18517.1.S1_at--974--9451Chr05:20486161..20486185 (25 bp)
TCTGGAAATTCGATGCCTGAGCTGA
LOC_Os05g34670
Os.18517.1.S1_at--1059--8911Chr05:20486133..20486157 (25 bp)
TGAGCTGAACATACTGCAAACCTGT
LOC_Os05g34670
Os.18517.1.S1_at--771--2371Chr05:20486116..20486140 (25 bp)
AAACCTGTTCTACTGCTGGAGATGA
LOC_Os05g34670
Os.18517.1.S1_at--1129--2471Chr05:20486068..20486092 (25 bp)
AACAGCACGGCTGGCATTAGGCCTT
LOC_Os05g34670
Os.18517.1.S1_at--44--2331Chr05:20485981..20486005 (25 bp)
AAAGTGATATGTCTGCTCGTGGGCT
LOC_Os05g34670
Os.18517.1.S1_at--651--8291Chr05:20485960..20485984 (25 bp)
GGCTTGTTGCTTGCTCATATTGTTG
LOC_Os05g34670
Os.18517.1.S1_at--967--111Chr05:20485932..20485956 (25 bp)
ATTCTTTGTGTACCTGGCTCCTAAA
LOC_Os05g34670
Os.18517.1.S1_at--1050--2431Chr05:20485786..20485810 (25 bp)
AAAAGGTTGCTGTTCCAGTGGACAA
LOC_Os05g34670
Target Sequence 
AACTCAACTGGGATGAAACGCGCTAAGACAGGACGGTGATCGGAGATCGCGACATCTGGAAATTCGATGCCTGAGCTGAT
GATGAGCTGAACATACTGCAAACCTGTTCTACTGCTGGAGATGATTGCTGATGCAAACAAAGGAAGGAACAGCACGGCTG
GCATTAGGCCTTGCCTTGATTTTGTGCGCTTGACCGCAGATATGTTNGTTGGATGGAAGAAAGGAAATCTATGTGAAAGT
GATATGTCTGCTCGTGGGCTTGTTGCTTGCTCATATTGTTGTTTATTCTTTGTGTACCTGGCTCCTAAATATTAACATTA
TTTTGTTTTGGATTAGTTAATGCAGTTGATGGGTGGTTCTTAGATATTGGGATTCAAGTGGTGGACAATAATCAGGTCTG
GTCTGTACNAAGGAGTAGGTTGTGGGGTGTCAAAAGGTTGCTGTTCCAGTGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis