Browse Element(s) Details


OsAffx.27164.1.S1_at

Description tigr:9633.m03211
TID=OsAffx.27164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to T5E21.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g346404/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified
LOC_Os05g34620NANA5+20448728..20450065retrotransposon protein, putative, unclassified
LOC_Os05g34630Os.27825.1.S1_at11/115+20453196..20456612hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27164.1.S1_at--922--2331NONE
AAAGAGGCCAGTTCCACAGAAAATG
NONE
OsAffx.27164.1.S1_at--708--10131Chr05:20461412..20461436 (25 bp)
TATGCAGCTCAAACCTGCAGTTTGG
LOC_Os05g34640
OsAffx.27164.1.S1_at--569--5031Chr05:20461428..20461452 (25 bp)
GCAGTTTGGTTCTGCATGCTTCAAA
LOC_Os05g34640
OsAffx.27164.1.S1_at--1113--7871Chr05:20461435..20461457 (23 bp)
GGTTCTGCATGCTTCAAAAATTTAG
LOC_Os05g34640
OsAffx.27164.1.S1_at--178--8911NONE
TGAGACATGGGAAGTTACCGTGCAT
NONE
OsAffx.27164.1.S1_at--19--8871NONE
TGAGGAAGTTCCTCGGGAGATTCCG
NONE
OsAffx.27164.1.S1_at--1026--9251NONE
TCCGGACCCGGCTTTAGGAATCGAT
NONE
OsAffx.27164.1.S1_at--71--5811NONE
GACCCGGCTTTAGGAATCGATTTTG
NONE
OsAffx.27164.1.S1_at--307--9631NONE
TCATGGGTACTGACTGTTGGCGTTT
NONE
OsAffx.27164.1.S1_at--756--6711NONE
GTTCGGCAAAGAGGCCAGCAACCAA
NONE
OsAffx.27164.1.S1_at--611--7291Chr05:20463508..20463532 (25 bp)
GTGCGTGAAGATCACACCTGCTCGA
LOC_Os05g34640
Target Sequence 
AAAGAGGCCAGTTCCACAGAAAATGGAAATATGCAGCTCAAACCTGCAGTTTGGTTCTGCATGCTTCAAAAATTTAGAGG
GGGGAACTTGTGCCTTTATGGGTACCCTAATGAGACATGGGAAGTTACCGTGCATGCTGAGGAAGTTCCTCGGGAGATTC
CGGACCCGGCTTTAGGAATCGATTTTGCTAGGGACGGCAGGAATGAGAAAGACTGGTTGGCGCTAGTGGCTGTCCACAGT
GATTCATGGGTACTGACTGTTGGCGTTTTATTTCGCAGCACGATTTGGGTTCGGCAAAGAGGCCAGCAACCAAGACCAGA
GTCTCATTCAAAGGCTCCAAAACCACCTGCACCCCCCAAGGATGATGATGAGAGCGGCGATGAGTATGCAGACGAGGAGG
AGGAGGAGCGCGACAACACCCTGTGCGGATCTTGTGGAACAAATGATGGCAAAGATGAGTTTTGGATCTGTTGTGATAGT
TGCGAGCGGTGGTACCATGGAAAGTGCGTGAAGATCACACCTGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis