Browse Element(s) Details


OsAffx.14961.1.S1_at

Description tigr:9633.m03213
TID=OsAffx.14961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3466010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14961.1.S1_at--930--8171Chr05:20481844..20481868 (25 bp)
GGAACGGTAGGAATCACCACTCCCT
LOC_Os05g34660
OsAffx.14961.1.S1_at--730--5071Chr05:20481914..20481938 (25 bp)
GCAGCCGCACGAACAGTGCAGCACT
LOC_Os05g34660
OsAffx.14961.1.S1_at--359--2491Chr05:20481925..20481949 (25 bp)
AACAGTGCAGCACTCACTTTGCGAA
LOC_Os05g34660
OsAffx.14961.1.S1_at--937--1111Chr05:20481928..20481952 (25 bp)
AGTGCAGCACTCACTTTGCGAAGCC
LOC_Os05g34660
OsAffx.14961.1.S1_at--475--3411Chr05:20481932..20481956 (25 bp)
CAGCACTCACTTTGCGAAGCCGCAG
LOC_Os05g34660
OsAffx.14961.1.S1_at--1057--5071Chr05:20481959..20481983 (25 bp)
GCAGCCATTGGCCTGCCGAACAGAT
LOC_Os05g34660
OsAffx.14961.1.S1_at--1142--11Chr05:20481965..20481986 (22 bp)
ATTGGCCTGCCGAACAGATTGGCTC
LOC_Os05g34660
OsAffx.14961.1.S1_at--1011--9151NONE
TGCCGAACAGATTGGCTCGTGGTCT
NONE
OsAffx.14961.1.S1_at--476--2491Chr05:20481977..20482267 (25 bp)
AACAGATTGGCTCGTGGTCTCAGAT
LOC_Os05g34660
OsAffx.14961.1.S1_at--23--31Chr05:20482251..20482272 (22 bp)
ATTGGCTCGTGGTCTCAGATCTTCA
LOC_Os05g34660
OsAffx.14961.1.S1_at--153--4811Chr05:20482252..20482276 (25 bp)
GCTCGTGGTCTCAGATCTTCAGTAT
LOC_Os05g34660
Target Sequence 
GGAACGGTAGGAATCACCACTCCCTCCCCTATGGACCCCGCGCTGCTTCCATGGGCCTGTACGGCTGCCCGCAGCCGCAC
GAACAGTGCAGCACTCACTTTGCGAAGCCGCAGCCGCAGCCATTGGCCTGCCGAACAGATTGGCTCGTGGTCTCAGATCT
TCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis