Browse Element(s) Details


Os.18450.1.S1_at

Description gb:AK100958.1
DB_XREF= gi:32986167
TID=Os.18450.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence.
FL= gb:AK100958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3470011/11GDSL-motif lipase/hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.18450.1.S1_at--172--4951Chr05:20506592..20507102 (25 bp)
GCAACCCGTGGTCCTACGGGTTCAG
LOC_Os05g34700
Os.18450.1.S1_at--451--9231Chr05:20506603..20507113 (25 bp)
TCCTACGGGTTCAGCGTGGTGGACA
LOC_Os05g34700
Os.18450.1.S1_at--999--10511Chr05:20507098..20507122 (25 bp)
TTCAGCGTGGTGGACAGAGGGTGCT
LOC_Os05g34700
Os.18450.1.S1_at--373--10671Chr05:20507164..20507188 (25 bp)
TTCCAGCGGCCGTGCCTGAACAGGA
LOC_Os05g34700
Os.18450.1.S1_at--860--9212Chr05:20507165..20507189 (25 bp)
TCCAGCGGCCGTGCCTGAACAGGAA
LOC_Os05g34700
Os.18450.1.S1_at--237--3391Chr05:20507167..20507191 (25 bp)
CAGCGGCCGTGCCTGAACAGGAACA
LOC_Os05g34700
Os.18450.1.S1_at--223--1611Chr05:20507168..20507192 (25 bp)
AGCGGCCGTGCCTGAACAGGAACAC
LOC_Os05g34700
Os.18450.1.S1_at--829--8411Chr05:20507171..20507195 (25 bp)
GGCCGTGCCTGAACAGGAACACCTA
LOC_Os05g34700
Os.18450.1.S1_at--683--4491Chr05:20507172..20507196 (25 bp)
GCCGTGCCTGAACAGGAACACCTAC
LOC_Os05g34700
Os.18450.1.S1_at--137--7291Chr05:20507175..20507199 (25 bp)
GTGCCTGAACAGGAACACCTACATC
LOC_Os05g34700
Os.18450.1.S1_at--998--4451Chr05:20507177..20507201 (25 bp)
GCCTGAACAGGAACACCTACATCTT
LOC_Os05g34700
Target Sequence
GCAACCCGTGGTCCTACGGGTTCAGCGTGGTGGACAGAGGGTGCTGTGGGATAGGGAGGAACAGGGGGATGATCACGTGC
CTGCCGTTCCAGCGGCCGTGCCTGAACAGGAACACCTACATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis