Browse Element(s) Details


Os.27206.1.S1_at

Description gb:AK067880.1
DB_XREF= gi:32977898
TID=Os.27206.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122J01, full insert sequence.
FL= gb:AK067880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3472010/11Uncharacterized ACR, COG1678 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27206.1.S1_at--1135--8871Chr05:20515075..20515099 (25 bp)
TGAGGGCCAGTGACAACTCTCGTCT
LOC_Os05g34720
Os.27206.1.S1_at--632--6151Chr05:20515113..20515137 (25 bp)
GAGGTCATACCAGGCATTCGCTTTG
LOC_Os05g34720
Os.27206.1.S1_at--167--5831Chr05:20515145..20515169 (25 bp)
GACCGACCTAGAGAAGGCTGCTGTT
LOC_Os05g34720
Os.27206.1.S1_at--764--951Chr05:20515198..20515222 (25 bp)
AGGACCTGAGGTTCTTCGTCGGGCA
LOC_Os05g34720
Os.27206.1.S1_at--797--10451Chr05:20515235..20515259 (25 bp)
TTACGAGCAGCTGTTGAGCGAGATC
LOC_Os05g34720
Os.27206.1.S1_at--385--6331Chr05:20515308..20515332 (25 bp)
GATGCACTGACAGGCGATCCTTCTT
LOC_Os05g34720
Os.27206.1.S1_at--349--4951Chr05:20515367..20515391 (25 bp)
GCATTACTCGGAGCTCAGCCAGAAA
LOC_Os05g34720
Os.27206.1.S1_at--496--6951Chr05:20515409..20515433 (25 bp)
GTAGATGCTGCTCATATGTACCATG
LOC_Os05g34720
Os.27206.1.S1_at--716--2311Chr05:20515444..20515468 (25 bp)
AAAGGTTGTATCTGTCCTGTACATA
LOC_Os05g34720
Os.27206.1.S1_at--1104--10051Chr05:20515492..20515516 (25 bp)
TAGTACAACTCTAGTCTCATGCCCT
LOC_Os05g34720
Os.27206.1.S1_at--777--2291NONE
AAATGTGGTTGCCTAATGCTGATAA
NONE
Target Sequence 
TGAGGGCCAGTGACAACTCTCGTCTCAAGGGGTTCGAGGAGGTCATACCAGGCATTCGCTTTGGCTTCCGGACCGACCTA
GAGAAGGCTGCTGTTNTGATGAAGAGTGGGGCAATTAAGAGCCAGGACCTGAGGTTCTTCGTCGGGCACGCTGCGTGGGA
TTACGAGCAGCTGTTGAGCGAGATCAGGGCAGGATACTGGGCCGTCGCCTCCTGCAGCACGGAGCTGATCAGCGATGCAC
TGACAGGCGATCCTTCTTGTCTNTGGACCGAGATATTGCAGCTGATGGGAGGGCATTACTCGGAGCTCAGCCAGAAACCA
AAGGAAGACAACCAGTAGATGCTGCTCATATGTACCATGACAAACAGCTAAAGGTTGTATCTGTCCTGTACATAATTGAA
ATAGGATAAATCTCNCCTAGTACAACTCTAGTCTCATGCCCTCCATGCTTCTTGTAGCAACTAGCAACTGCTATGTATGC
AACTATTGAATATGCATTTATCATGNTCAAATAAGCTCTGCACGATGATTGNGAATGGATGATGGNNAATGCCGAAATGT
GGAAAAATGTGGTTGCCTAATGCTGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis