Browse Element(s) Details


Os.14243.1.S1_at

Description gb:AK070104.1
DB_XREF= gi:32980128
TID=Os.14243.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045K24, full insert sequence.
FL= gb:AK070104.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3476011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14243.1.S1_at--1016--5571Chr05:20544251..20544275 (25 bp)
GAAATTTTCTACTGCATTACACGCT
LOC_Os05g34760
Os.14243.1.S1_at--731--10471Chr05:20544267..20544291 (25 bp)
TTACACGCTTTTGATTTGCTGATAA
LOC_Os05g34760
Os.14243.1.S1_at--116--411Chr05:20544300..20544324 (25 bp)
ATCATTTTTTCAGGGCATTCAGGAG
LOC_Os05g34760
Os.14243.1.S1_at--711--4611Chr05:20544328..20544352 (25 bp)
GCGAGATCTCAAATATCCTCATCAA
LOC_Os05g34760
Os.14243.1.S1_at--479--2291Chr05:20544854..20544878 (25 bp)
AAATGAGGCATTCGACGCATCTAAA
LOC_Os05g34760
Os.14243.1.S1_at--249--10491Chr05:20544883..20544907 (25 bp)
TTAACCGTGCTGTTCCTCGTTATCT
LOC_Os05g34760
Os.14243.1.S1_at--778--9251Chr05:20544896..20544920 (25 bp)
TCCTCGTTATCTTCTGTCATTAGTC
LOC_Os05g34760
Os.14243.1.S1_at--899--1091Chr05:20544917..20544941 (25 bp)
AGTCGTTACTAGTACCACTTACCAT
LOC_Os05g34760
Os.14243.1.S1_at--304--1111Chr05:20544975..20544999 (25 bp)
AGTGTTCGTATCTACCAATCTGTAA
LOC_Os05g34760
Os.14243.1.S1_at--1124--9731Chr05:20545017..20545041 (25 bp)
TAATCCCGTAGTTCTACCGTCCAAG
LOC_Os05g34760
Os.14243.1.S1_at--111--1551Chr05:20545080..20545104 (25 bp)
AGCTTTTGGCTGATGAACCTTGACC
LOC_Os05g34760
Target Sequence 
GAAATTTTCTACTGCATTACACGCTTTTGATTTGCTGATAATGATGATTATCATTTTTTCAGGGCATTCAGGAGACAGCG
AGATCTCAAATATCCTCATCAAAGAGTGCAACTCCTGCACAGACTNAGAAGTATAAAGACAAGGGCTCCCAACCCACCTC
CGCNCTCCTCCCCCACCGCGGCGACNCTTCTCAGATATCCAGCAAGACAAACACAAATAACTTGTCTGTTGGTGGAAGGA
AGCCCAAGGCTTCTACTCCACACTGGCACTAACCCNAATCGAAAGTCNTCCAANTCTAGGATNCCTGCAGAACAAGATNA
GCNTGTGAAAAAATGTGAAGAAAAAATGAGGCATTCGACGCATCTAAAAGCANTTAACCGTGCTGTTCCTCGTTATCTTC
TGTCATTAGTCGTTACTAGTACCACTTACCATCACTNNNNTGTCACCTATTAGAAGTAACCGATGTAGTGTTCGTATCTA
CCAATCTGTAATATGTCCNAGTTCTCCACTAATCCCGTAGTTCTACCGTCCAAGAATTTACCTAGAACATTGTATATACC
TGNAATNAATGGAGCTTTTGGCTGATGAACCTTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis