Browse Element(s) Details


OsAffx.22564.2.S1_at

Description tigr:9635.m03596
TID=OsAffx.22564.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3637010/11F-box domain containing protein
LOC_Os05g347602/11expressed protein
LOC_Os09g175201/11hypothetical protein
LOC_Os09g163801/11ABC1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22564.2.S1_at--566--5051Chr07:21747299..21747323 (25 bp)
GCACTGGTATAGCAAAGCTGTCCCT
LOC_Os07g36370
OsAffx.22564.2.S1_at--198--2331Chr07:21747286..21747310 (25 bp)
AAAGCTGTCCCTGAGAAACCAAGAA
LOC_Os07g36370
OsAffx.22564.2.S1_at--1012--7051Chr07:21746322..21746346 (25 bp)
GTAAGAATAATCTGTCACCCTTCGT
LOC_Os07g36370
OsAffx.22564.2.S1_at--660--5691NONE
GACTTCTGTGGAACCATATTGCCCA
NONE
OsAffx.22564.2.S1_at--852--82528Chr12:16902391..16902415 (25 bp)
GGCAGAAGCTCCAACAAGTATCAGT
NONE
OsAffx.22564.2.S1_at--94--3719Chr12:16902410..16902434 (25 bp)
ATCAGTTTACTCATTTTCTTATCAA
NONE
OsAffx.22564.2.S1_at--287--10431Chr07:21745402..21745426 (25 bp)
TTATCAACTTCCAAAAACCACCCAT
LOC_Os07g36370
OsAffx.22564.2.S1_at--232--10132Chr05:13339473..13339497 (25 bp)
TATGAGATACGCTAACTGGAAGATT
NONE
OsAffx.22564.2.S1_at--1051--14132Chr11:17102275..17102295 (21 bp)
AGAAAACTGAACTGCTCTCCACAAA
NONE
OsAffx.22564.2.S1_at--97--8991Chr07:21745330..21745354 (25 bp)
TGAACTGCTCTCCACAAAAACTTCG
LOC_Os07g36370
OsAffx.22564.2.S1_at--61--2392Chr01:31570291..31570423 (25 bp)
AAACGAACACCTCAAGCTGCTATTC
NONE
Target Sequence 
GCACTGGTATAGCAAAGCTGTCCCTGAGAAACCAAGAAGATTTCCAGGTTGAAAATGCTTGTCCACCGAACTGCCTCTGT
GACCGGCCACGAAACTGGAGAGATAAGGACATTTCAATGATGTCTCTAAGAGAAGTAGAGATCCTCAACTTCAGAGGGAG
GCAACATGAGCTTGACCTTGTGAGGGTCTTAGTCCGGGTAGCACCAGCCCTTGACCTTGTAAGAATAATCTGTCACCCTT
CGTCCACTGCTTTTGGGGTAGAGTCGCTACGTGCCTATGTACGAAGTTTTGCAAGCTTTAGGACTTCTGTGGAACCATAT
TGCCCAACAAATGGCAGAAGCTCCAACAAGTATCAGTTTACTCATTTTCTTATCAACTTCCAAAAACCACCCATCAAAAA
TATGAGATACGCTAACTGGAAGATTAAATCCAAAAGAAAACTGAACTGCTCTCCACAAAAACTTCGCAACATGACAATCG
AAAAAGAGATGTTGAATAGACTTATTCTTCAAACAAAACGAACACCTCAAGCTGCTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22564.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis