Browse Element(s) Details


Os.8081.1.A1_at

Description gb:CA759855
DB_XREF= gi:25803894
DB_XREF=BR060010B20B07.ab1
CLONE=BR060010B20B07.ab1
TID=Os.8081.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8081 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_199046.1 (A.thaliana) maize crp1 protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3639010/11CRP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8081.1.A1_at--707--9891NONE
TACTTATAGTTGATGCCTGACGGGA
NONE
Os.8081.1.A1_at--635--1431Chr07:21754959..21754983 (25 bp)
AGAAGAAATGTTTCAGCCGATTTTT
LOC_Os07g36390
Os.8081.1.A1_at--901--8511Chr07:21755096..21755116 (21 bp)
TGGAAGGTGAATCTCCATCTTCTGG
LOC_Os07g36390
Os.8081.1.A1_at--459--10611Chr07:21755111..21755135 (25 bp)
TTCTGGCTTCTGACTCTTCTCTTAA
LOC_Os07g36390
Os.8081.1.A1_at--934--4591Chr07:21755152..21755176 (25 bp)
GCGAACGCACAATATCTGCCTATTT
LOC_Os07g36390
Os.8081.1.A1_at--753--251Chr07:21755163..21755187 (25 bp)
ATATCTGCCTATTTCTTCCTAATCA
LOC_Os07g36390
Os.8081.1.A1_at--943--2251Chr07:21755277..21755301 (25 bp)
AAATACATGGAATGTCTGTGGCGAC
LOC_Os07g36390
Os.8081.1.A1_at--818--5191Chr07:21755323..21755347 (25 bp)
GAATTGATATTAGCCGATGGTTCCA
LOC_Os07g36390
Os.8081.1.A1_at--385--4511Chr07:21755335..21755359 (25 bp)
GCCGATGGTTCCAACCATGGTATTT
LOC_Os07g36390
Os.8081.1.A1_at--599--5591Chr07:21755363..21755387 (25 bp)
GACACGATGAAACTGTAACACGGTA
LOC_Os07g36390
Os.8081.1.A1_at--649--9791Chr07:21755378..21755402 (25 bp)
TAACACGGTACTTTTTTCAGGTGAT
LOC_Os07g36390
Target Sequence 
TACTTATAGTTGATGCCTGACGGGAGAAGAAATGTTTCAGCCGATTTTTCTGAACATTCAATGGAAGGTGAATCTCCATC
TTCTGGCTTCTGACTCTTCTCTTAAGCAAGNTGAATTAATCGCGAACGCACAATATCTGCCTATTTCTTCCTAATCAGTA
AGGATAAGAAAGTGCAATTTGATTGTTTCCACAAGAATGGGGACTTAAGTACAAAGACAAAGGAAAGAGGAGCTTGGCAT
TAGAATNNAAATACATGGAATGTCTGTGGCGACNACAAAATTATGGGATGTTTGGAATTGATATTAGCCGATGGTTCCAA
CCATGGTATTTCCTGACACGATGAAACTGTAACACGGTACTTTTTTCAGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8081.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis