Browse Element(s) Details


Os.29958.1.S1_at

Description gb:AK109605.1
DB_XREF= gi:32994814
TID=Os.29958.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.10 (P0534A03.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-F02, full insert sequence.
FL= gb:AK109605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3640011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29958.1.S1_at--237--7531Chr07:21762023..21762047 (25 bp)
GTGGAAGTGAGTCAAGCCCCTCCCT
LOC_Os07g36400
Os.29958.1.S1_at--328--9311Chr07:21762043..21762067 (25 bp)
TCCCTCTTTGCAGCGACAGTGAACT
LOC_Os07g36400
Os.29958.1.S1_at--209--5391Chr07:21762107..21762131 (25 bp)
GAAGCAGCTTTGTTGGCTGCCGACC
LOC_Os07g36400
Os.29958.1.S1_at--673--751Chr07:21762136..21762160 (25 bp)
ATGTACCTGGCATGTTTTGGCCCGA
LOC_Os07g36400
Os.29958.1.S1_at--176--10231Chr07:21762151..21762175 (25 bp)
TTTGGCCCGATTGTGCTGTAAAGAA
LOC_Os07g36400
Os.29958.1.S1_at--630--5971Chr07:21762183..21762207 (25 bp)
GAGAAACTGATCTAGCTGCGGCCAA
LOC_Os07g36400
Os.29958.1.S1_at--644--9131Chr07:21762199..21762223 (25 bp)
TGCGGCCAATTTTGCTGCCATTGTA
LOC_Os07g36400
Os.29958.1.S1_at--909--4431Chr07:21762215..21762239 (25 bp)
GCCATTGTAGTTTGTCCTCATGAAC
LOC_Os07g36400
Os.29958.1.S1_at--151--3191Chr07:21762239..21762263 (25 bp)
CAATTCTTAGCATTTGACATTCTGG
LOC_Os07g36400
Os.29958.1.S1_at--465--5271Chr07:21762263..21762287 (25 bp)
GAATGCCTTTTGTTAGTATGGTGCA
LOC_Os07g36400
Os.29958.1.S1_at--771--5111Chr07:21762292..21762316 (25 bp)
GCACTTGTTGCTTAGTTTGGTCAGA
LOC_Os07g36400
Target Sequence 
GTGGAAGTGAGTCAAGCCCCTCCCTCTTTGCAGCGACAGTGAACTGAGAAGTAAGAAGAAGCTTTGTTAAAAAAAGAAGA
AGAAGCAGCTTTGTTGGCTGCCGACCCTTGATGTACCTGGCATGTTTTGGCCCGATTGTGCTGTAAAGAAAGGAACAGAG
AAACTGATCTAGCTGCGGCCAATTTTGCTGCCATTGTAGTTTGTCCTCATGAACAATTCTTAGCATTTGACATTCTGGAA
TGCCTTTTGTTAGTATGGTGCAGGGTGCACTTGTTGCTTAGTTTGGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis