Browse Element(s) Details


OsAffx.10327.1.S1_x_at

Description gb:NM_185731.1
DB_XREF= gi:34898547
TID=OsAffx.10327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1612_A04.31 (OJ1612_A04.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g363703/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein
LOC_Os07g36390Os.44710.1.S1_at11/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36390Os.8081.1.A1_at10/117+21752159..21755527CRP1, putative, expressed
LOC_Os07g36400Os.29958.1.S1_at11/117+21758911..21762320expressed protein
LOC_Os07g36400Os.29958.2.S1_x_at10/117+21758911..21762320expressed protein
LOC_Os07g36400Os.22353.3.S1_x_at1/117+21758911..21762320expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10327.1.S1_x_at--5--9191NONE
TCCAGGTTGAAAATGCTTGTCCAGT
NONE
OsAffx.10327.1.S1_x_at--841--3611Chr07:21732534..21732558 (25 bp)
CTTGTCCAGTGAACTGCCTCTGTGA
NONE
OsAffx.10327.1.S1_x_at--954--9452Chr07:21746465..21746489 (25 bp)
TCTGTGACCGGCCACGAAACTGGAG
LOC_Os07g36370
OsAffx.10327.1.S1_x_at--553--8131Chr07:21732485..21732509 (25 bp)
GGACATTTCGATGAGATCTCTCACA
NONE
OsAffx.10327.1.S1_x_at--1005--3411Chr07:21732462..21732486 (25 bp)
CAGAAATAGTGATCCTCAACTTCAG
NONE
OsAffx.10327.1.S1_x_at--651--6131Chr07:21732410..21732434 (25 bp)
GAGGGTCTTAGTCCAGGTAGCACCA
NONE
OsAffx.10327.1.S1_x_at--998--1712Chr07:21732389..21732413 (25 bp)
ACCAGCCCTTGACCTTGTAAGAATG
NONE
OsAffx.10327.1.S1_x_at--8--5271Chr07:21732369..21732393 (25 bp)
GAATGACATGTCACCGTTCGTTAGC
NONE
OsAffx.10327.1.S1_x_at--628--7091Chr07:21732360..21732384 (25 bp)
GTCACCGTTCGTTAGCTGCTTTTGG
NONE
OsAffx.10327.1.S1_x_at--89--6951Chr07:21732334..21732358 (25 bp)
GTAGAGTTGCTACGTGCCTATGTAC
NONE
OsAffx.10327.1.S1_x_at--791--4452Chr07:21746268..21746292 (25 bp)
GCCTATGTACGAAGTTTTGCAAGCT
LOC_Os07g36370
Target Sequence 
TCCAGGTTGAAAATGCTTGTCCAGTGAACTGCCTCTGTGACCGGCCACGAAACTGGAGAGATAAGGACATTTCGATGAGA
TCTCTCACAGAAATAGTGATCCTCAACTTCAGAGGGAAGCAACATGAGCTTGACCTTGTGAGGGTCTTAGTCCAGGTAGC
ACCAGCCCTTGACCTTGTAAGAATGACATGTCACCGTTCGTTAGCTGCTTTTGGGGTAGAGTTGCTACGTGCCTATGTAC
GAAGTTTTGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10327.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis