Browse Element(s) Details


OsAffx.16582.1.S1_at

Description tigr:9635.m03592
TID=OsAffx.16582.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3633011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein
LOC_Os07g36300OsAffx.28777.1.S1_x_at11/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.28777.2.S1_at9/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.8626.1.S1_at2/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.29958.2.S1_x_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.5606.1.S1_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein
LOC_Os07g36360Os.10631.1.S1_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40855.5.S1_x_at11/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_at9/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36360Os.40360.1.S1_x_at6/117+21737978..21741826F-box domain containing protein, expressed
LOC_Os07g36370OsAffx.22564.2.S1_at10/117+21745224..21749411F-box domain containing protein
LOC_Os07g36370OsAffx.10327.1.S1_x_at3/117+21745224..21749411F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16582.1.S1_at--436--10691Chr07:21723459..21723483 (25 bp)
TTGCCGCTGCTGACGATGATACACA
LOC_Os07g36330
OsAffx.16582.1.S1_at--616--4171Chr07:21723434..21723458 (25 bp)
CCCACTGTGTTTTTTGTTCTGAATC
LOC_Os07g36330
OsAffx.16582.1.S1_at--676--1871Chr07:21723407..21723431 (25 bp)
ACGAGGCTTTCATCGAAGGATACTA
LOC_Os07g36330
OsAffx.16582.1.S1_at--429--1471Chr07:21723357..21723381 (25 bp)
AGAATTAGCCATCTTGACCTGCGTT
LOC_Os07g36330
OsAffx.16582.1.S1_at--262--3631Chr07:21723345..21723369 (25 bp)
CTTGACCTGCGTTTTGTGATTGAAC
LOC_Os07g36330
OsAffx.16582.1.S1_at--1000--6471Chr07:21722581..21722605 (25 bp)
GATAGACAATATCCAACTCCCTTAC
LOC_Os07g36330
OsAffx.16582.1.S1_at--788--7411Chr07:21722502..21722526 (25 bp)
GTGTTGCATATTCTCACAAAGCGTA
LOC_Os07g36330
OsAffx.16582.1.S1_at--429--1131Chr07:21721970..21721994 (25 bp)
AGTGCATCTGTGATGGGCCACCAGA
LOC_Os07g36330
OsAffx.16582.1.S1_at--524--1471Chr07:21721818..21721842 (25 bp)
AGAATAATCTGCCACCGTTCGTGCG
LOC_Os07g36330
OsAffx.16582.1.S1_at--1047--10611Chr07:21721801..21721825 (25 bp)
TTCGTGCGCTGCTTGGGAGACACTA
LOC_Os07g36330
OsAffx.16582.1.S1_at--631--5631Chr07:21721783..21721807 (25 bp)
GACACTATCTGCACATATACGAGGT
LOC_Os07g36330
Target Sequence 
TTGCCGCTGCTGACGATGATACACACCCACTGTGTTTTTTGTTCTGAATCGAACGAGGCTTTCATCGAAGGATACTATCA
GCTTCTTCTCAATCGCTATCCAAGAATTAGCCATCTTGACCTGCGTTTTGTGATTGAACTAATTCGAGATGAAAAAAGCG
TTACGGATTCGATGATAGACAATATCCAACTCCCTTACATTAGGATGTTGAACCTAGCTTTGAAAACAGAAGGCCATGTT
TATGGAGCTAGTGTGTTGCATATTCTCACAAAGCGTACTACTATAGCAGAGCTGAGGCTGGTGAACCAAGAAAAATTCAA
GTCTGATGATGCATGTAAGCTGGAGTGCATCTGTGATGGGCCACCAGATTGGAGAGAAACGGACATTTCGATGAGGTATC
TGAGGAAAGTAGAGATCCTCAACTTCAGAGGGGAGGAACATGAGCTTGACCTCCTGAGGGTCTTAGTCAGGGTAGCACCA
GCACTGAGGATGATCAGAATAATCTGCCACCGTTCGTGCGCTGCTTGGGAGACACTATCTGCACATATACGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis