Browse Element(s) Details


OsAffx.28777.2.S1_at

Description tigr:9635.m03589
TID=OsAffx.28777.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g363009/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36270NANA7+21679126..21683366retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g36280OsAffx.28776.4.S1_at11/117+21690901..21693103F-box domain containing protein
LOC_Os07g36280OsAffx.28776.3.S1_x_at1/117+21690901..21693103F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_x_at11/117+21699926..21703973F-box domain containing protein
LOC_Os07g36290OsAffx.28776.3.S1_at10/117+21699926..21703973F-box domain containing protein
LOC_Os07g36300OsAffx.28777.1.S1_x_at11/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.28777.2.S1_at9/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300OsAffx.8626.1.S1_at2/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.29958.2.S1_x_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36300Os.5606.1.S1_at1/117+21705942..21711955F-box domain containing protein, expressed
LOC_Os07g36310OsAffx.28778.1.S1_x_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.2.S1_s_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36310OsAffx.28778.1.S1_at11/117+21716918..21717286hypothetical protein
LOC_Os07g36320NANA7+21719985..21720977F-box domain containing protein
LOC_Os07g36330OsAffx.16582.1.S1_at11/117+21721517..21724704F-box domain containing protein
LOC_Os07g36340OsAffx.22564.1.S1_at11/117+21726595..21730379F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28777.2.S1_at--403--2711Chr07:21708427..21708451 (25 bp)
AAGCAGTTGGTACTATTTATTGTAG
LOC_Os07g36300
OsAffx.28777.2.S1_at--850--131NONE
ATTACTTAGGAAGGTTCAACATGCA
NONE
OsAffx.28777.2.S1_at--605--7891Chr07:21711390..21711414 (25 bp)
GGTTCAACATGCATGTTCACCGAAC
LOC_Os07g36300
OsAffx.28777.2.S1_at--369--4991Chr07:21711400..21711424 (25 bp)
GCATGTTCACCGAACTGCAGTTGTG
LOC_Os07g36300
OsAffx.28777.2.S1_at--1065--1971Chr07:21711413..21711437 (25 bp)
ACTGCAGTTGTGATTGGCCACCAAA
LOC_Os07g36300
OsAffx.28777.2.S1_at--93--6031Chr07:21711484..21711508 (25 bp)
GAGATCCTCAACTTCGGAGGAAAGG
LOC_Os07g36300
OsAffx.28777.2.S1_at--284--4311Chr07:21711579..21711603 (25 bp)
CCACCGTTCGTTGTCTGCTTGGGAG
LOC_Os07g36300
OsAffx.28777.2.S1_at--774--6531NONE
GATTTCAGTGGAACATTTGACATTC
NONE
OsAffx.28777.2.S1_at--312--3891Chr07:21711853..21711877 (25 bp)
CTGGAATGCCATTTTTGTTAGTACG
LOC_Os07g36300
OsAffx.28777.2.S1_at--292--10451Chr07:21711870..21711894 (25 bp)
TTAGTACGGAGCAGTGTGCCCTTGT
LOC_Os07g36300
OsAffx.28777.2.S1_at--967--8691Chr07:21711884..21711908 (25 bp)
TGTGCCCTTGTTGCTTGGTCAGAAC
LOC_Os07g36300
Target Sequence 
AAGCAGTTGGTACTATTTATTGTAGAAAACTCAAAATTACTTAGGAAGGTTCAACATGCATGTTCACCGAACTGCAGTTG
TGATTGGCCACCAAACTGGAGAGATAATAAGGACATTTCGATGAGGTCTCTCGGAGAAGTAGAGATCCTCAACTTCGGAG
GAAAGGAACATGAGCTTGACCTTCTGAGGGTCTTAGTCAGGGTAGCAACAGTCCTTAGGAGGATCAGAATAACCTGCCAC
CGTTCGTTGTCTGCTTGGGAGAGACTATCTGCAGTCATACAAAGTTTTGCAAGACCAGAGATTTCAGTGGAACATTTGAC
ATTCTGGAATGCCATTTTTGTTAGTACGGAGCAGTGTGCCCTTGTTGCTTGGTCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28777.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis